Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HV94_RS21055 Genome accession   NZ_CP008872
Coordinates   4495817..4496875 (-) Length   352 a.a.
NCBI ID   WP_023090760.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain X78812     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4490817..4501875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV94_RS21025 (HV94_21975) pal 4491258..4491764 (-) 507 WP_003111417.1 peptidoglycan-associated lipoprotein Pal -
  HV94_RS21030 (HV94_21980) tolB 4491817..4493115 (-) 1299 WP_003086128.1 Tol-Pal system beta propeller repeat protein TolB -
  HV94_RS21035 (HV94_21985) tolA 4493112..4494155 (-) 1044 WP_003117096.1 cell envelope integrity protein TolA -
  HV94_RS21040 (HV94_21990) tolR 4494158..4494598 (-) 441 WP_003086126.1 protein TolR -
  HV94_RS21045 (HV94_21995) tolQ 4494621..4495316 (-) 696 WP_003086125.1 protein TolQ -
  HV94_RS21050 (HV94_22000) ybgC 4495318..4495764 (-) 447 WP_003086124.1 tol-pal system-associated acyl-CoA thioesterase -
  HV94_RS21055 (HV94_22005) ruvB 4495817..4496875 (-) 1059 WP_023090760.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HV94_RS21060 (HV94_22010) ruvA 4496886..4497491 (-) 606 WP_009315344.1 Holliday junction branch migration protein RuvA -
  HV94_RS21065 (HV94_22015) ruvC 4497508..4498032 (-) 525 WP_003112575.1 crossover junction endodeoxyribonuclease RuvC -
  HV94_RS21070 (HV94_22020) - 4498117..4498863 (-) 747 WP_003086107.1 YebC/PmpR family DNA-binding transcriptional regulator -
  HV94_RS21075 (HV94_22025) aspS 4498930..4500705 (-) 1776 WP_003123218.1 aspartate--tRNA ligase -
  HV94_RS21080 (HV94_22030) - 4501145..4501615 (+) 471 WP_003086103.1 Dps family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38990.71 Da        Isoelectric Point: 5.0704

>NTDB_id=110566 HV94_RS21055 WP_023090760.1 4495817..4496875(-) (ruvB) [Pseudomonas aeruginosa strain X78812]
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILDLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ
GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRV
VTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=110566 HV94_RS21055 WP_023090760.1 4495817..4496875(-) (ruvB) [Pseudomonas aeruginosa strain X78812]
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAGCTGGACCGCGCCATTCGCCCGCT
GAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAGCTGTTCATCCATGCCGCGCGCGGCCGCCAGG
AGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGCTGGGCAAGACGACCCTGGCGAATATCATCGCCCAGGAAATG
GGCGTTTCCATCAAGAGTACTTCCGGGCCGGTGCTCGAGCGTCCCGGCGATCTCGCCGCGTTGCTGACCAACCTGGAGGC
CGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCGCCCATCGTCGAAGAAGTGCTGTATCCGGCCATGGAAGATT
TCCAGTTGGACATCATGATCGGCGAAGGGCCCGCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACCCTGGTCGGC
GCGACCACTCGTGCCGGCATGCTGACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGT
CGAGGACCTGGCGACCATCGTCAGTCGGTCGGCCGGCATTCTCGACCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCG
CCAAGCGCGCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTTGACCACCTCGACCG
TCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCTGCGGCGTTGAGCGAGG
AGCGGCACACGATCGAAGATGTACTGGAGCCCTATCTGATCCAGCAGGGCTACATCATGCGGACACCGCGGGGACGCGTG
GTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGGTTGGGGCCGGGGGTGACGACGGATCTGTTCAC
GTCTGAAGATGGTAATTAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(185-258)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(24-182)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.027

94.034

0.574
  ruvB Streptococcus pneumoniae TIGR4

59.062

90.909

0.537
  ruvB Streptococcus pneumoniae R6

58.75

90.909

0.534
  ruvB Streptococcus pneumoniae D39

58.75

90.909

0.534
  ruvB Synechocystis sp. PCC 6803

57.143

91.477

0.523
  ruvB Helicobacter pylori 26695

55.449

88.636

0.491

Multiple sequence alignment