Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACAM37_RS07490 Genome accession   NZ_AP031595
Coordinates   1703899..1704951 (-) Length   350 a.a.
NCBI ID   WP_369625896.1    Uniprot ID   -
Organism   Moraxella sp. K23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698899..1709951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM37_RS07465 (MOXK23_14530) - 1698952..1699488 (-) 537 WP_076774545.1 shikimate kinase -
  ACAM37_RS07470 (MOXK23_14540) pilQ 1699596..1701926 (-) 2331 WP_369625894.1 type IV pilus secretin PilQ -
  ACAM37_RS07475 (MOXK23_14550) - 1701944..1702477 (-) 534 WP_065253722.1 pilus assembly protein PilP -
  ACAM37_RS07480 (MOXK23_14560) - 1702467..1703171 (-) 705 WP_099834468.1 type 4a pilus biogenesis protein PilO -
  ACAM37_RS07485 (MOXK23_14570) - 1703228..1703899 (-) 672 WP_369625895.1 PilN domain-containing protein -
  ACAM37_RS07490 (MOXK23_14580) pilM 1703899..1704951 (-) 1053 WP_369625896.1 pilus assembly protein PilM Machinery gene
  ACAM37_RS07495 (MOXK23_14590) - 1705153..1707882 (+) 2730 WP_369625897.1 penicillin-binding protein 1A -
  ACAM37_RS07500 (MOXK23_14600) - 1707958..1708476 (-) 519 WP_050323998.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38448.86 Da        Isoelectric Point: 4.5790

>NTDB_id=110557 ACAM37_RS07490 WP_369625896.1 1703899..1704951(-) (pilM) [Moraxella sp. K23]
MRLFTKNNKLVVGVDITTTAIKMVEITRQQGLFHLRNYGIEPLPRGAVVDKNIVDIEAVSDALARLSRSRGFSSKHIATA
VASSSVISKIIEMEADLTELERESLIRLDADQYIPYPLSEVNLDFEVIGPSATPDMCKVLLVASRTENVDQRVDAGALAG
LDTKIVDVESYAVERAFQLMVDSLPGQPQHIALIDIGHSQTTLYIAKDGEFVYSREQLFGGAQLTESIQNRYGLTFEEAM
INKRTLSLPDDYYTDVLLPFLDAIVQQITRSLQFYFSSSQNSQVDYILLGGGSASIAGLANMVEQKLGTRTGIANAFSNM
TINNHINTELLIMDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=110557 ACAM37_RS07490 WP_369625896.1 1703899..1704951(-) (pilM) [Moraxella sp. K23]
GTGAGGTTATTTACAAAAAACAACAAGCTAGTCGTTGGGGTAGATATCACCACCACTGCGATCAAAATGGTTGAAATAAC
ACGGCAGCAAGGTCTATTTCATTTAAGAAATTACGGCATTGAACCGTTACCCCGCGGTGCTGTTGTTGATAAAAATATTG
TAGATATTGAAGCGGTCAGTGACGCCCTCGCAAGATTATCTCGTAGCAGAGGTTTTTCCAGTAAACATATCGCGACAGCC
GTAGCAAGCTCTTCGGTTATTAGCAAAATCATTGAGATGGAAGCGGATCTCACAGAGCTTGAACGAGAATCCCTTATACG
TCTAGATGCTGACCAATATATTCCCTATCCTTTATCAGAAGTTAATTTAGATTTTGAAGTGATTGGCCCTTCAGCTACGC
CTGATATGTGTAAGGTATTATTAGTTGCCTCTCGCACTGAAAACGTTGACCAACGTGTCGACGCGGGTGCTTTGGCGGGG
CTGGATACTAAAATTGTGGATGTGGAGTCTTACGCAGTTGAACGCGCCTTTCAATTGATGGTCGATAGCTTGCCAGGTCA
ACCTCAGCATATAGCCCTTATTGATATCGGGCACAGCCAAACCACGCTTTATATTGCAAAGGACGGGGAGTTTGTATACA
GCCGTGAACAGCTTTTTGGCGGTGCCCAGTTAACTGAAAGTATTCAAAATCGTTATGGTTTGACGTTCGAGGAGGCGATG
ATTAATAAGCGCACCCTGTCATTGCCAGATGATTACTATACGGATGTGTTACTGCCATTTTTAGATGCCATTGTGCAGCA
AATTACCCGCTCGCTGCAGTTTTATTTTTCATCCAGCCAAAATAGCCAAGTAGACTATATTTTGTTGGGTGGTGGTAGTG
CCAGCATTGCGGGTCTAGCGAACATGGTTGAACAAAAACTTGGTACCCGCACAGGTATTGCCAATGCATTTTCAAATATG
ACGATTAATAACCATATCAACACTGAATTACTGATTATGGATGCGCCAAGCCTGATGGCGGCTTGTGGCTTGGCGTTACG
GAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.707

100

0.529
  comM Acinetobacter nosocomialis M2

51.852

100

0.52
  comM Acinetobacter baylyi ADP1

49.003

100

0.491
  pilM Legionella pneumophila strain ERS1305867

43.059

100

0.434

Multiple sequence alignment