Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACN429_RS04745 Genome accession   NZ_CP183397
Coordinates   1021102..1022442 (-) Length   446 a.a.
NCBI ID   WP_007160808.1    Uniprot ID   A0A329HJV6
Organism   Pseudomonas oryzihabitans strain CCSM P719     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016102..1027442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN429_RS04715 (ACN429_04715) - 1016944..1017492 (-) 549 WP_074583966.1 pilus assembly PilX family protein -
  ACN429_RS04720 (ACN429_04720) - 1017489..1018259 (-) 771 WP_074583965.1 PilW family protein -
  ACN429_RS04725 (ACN429_04725) pilV 1018262..1018777 (-) 516 WP_074583964.1 type IV pilus modification protein PilV -
  ACN429_RS04730 (ACN429_04730) - 1018774..1019283 (-) 510 WP_074583963.1 GspH/FimT family pseudopilin -
  ACN429_RS04735 (ACN429_04735) - 1019399..1019905 (-) 507 WP_074583962.1 GspH/FimT family pseudopilin -
  ACN429_RS04740 (ACN429_04740) - 1020043..1021101 (+) 1059 WP_420030670.1 NAD(P)/FAD-dependent oxidoreductase -
  ACN429_RS04745 (ACN429_04745) pilR 1021102..1022442 (-) 1341 WP_007160808.1 sigma-54-dependent transcriptional regulator Regulator
  ACN429_RS04750 (ACN429_04750) pilS 1022445..1024019 (-) 1575 WP_044341571.1 sensor histidine kinase Regulator
  ACN429_RS04755 (ACN429_04755) - 1024003..1024251 (-) 249 WP_027600187.1 PP0621 family protein -
  ACN429_RS04760 (ACN429_04760) - 1024383..1026005 (+) 1623 WP_377709515.1 NAD+ synthase -
  ACN429_RS04765 (ACN429_04765) - 1026117..1027142 (-) 1026 WP_007160812.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48948.21 Da        Isoelectric Point: 5.8417

>NTDB_id=1105528 ACN429_RS04745 WP_007160808.1 1021102..1022442(-) (pilR) [Pseudomonas oryzihabitans strain CCSM P719]
MARQKVLIVDDEPDIRELLEITLGRMKLDTASAKNIADARAILERESFDLCLTDMRLPDGSGLDLIQFIQQRFPQLPVAM
ITAFGSLETAVQALKAGAFDYLTKPVDLPRLRELVGTALRLSGPAPAAAGASETQLLGESPPMRALRNQIAKLARSQAPV
YISGESGSGKERVARLIHEQGPRAGRPFVPVNCGAIPSELVESEFFGHRKGSFTGAIEDKQGLFQAAQGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRPVGSQQEISLDVRILSATHRDLAAEVAAGTFRQDLYYRLNVIELQVPALRERREDIGILANH
MLERLARDSGLAAATLGEDALAKLKSYRFPGNVRELENMLERAYTLCEGDVIRPADLRLADAPAATATGEASLANIANLE
DHLESIERQLIMQALEETRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1105528 ACN429_RS04745 WP_007160808.1 1021102..1022442(-) (pilR) [Pseudomonas oryzihabitans strain CCSM P719]
ATGGCCCGACAGAAAGTCCTGATCGTCGACGATGAACCCGATATCCGCGAACTCCTGGAGATCACCCTGGGGCGGATGAA
GCTCGACACCGCCAGCGCCAAGAACATCGCCGATGCCCGGGCCATCCTCGAACGGGAAAGCTTCGACCTCTGCCTGACCG
ACATGCGTCTGCCCGACGGCTCGGGACTGGACCTGATCCAGTTCATCCAGCAACGCTTTCCGCAATTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGTCTGGAAACCGCGGTCCAGGCCCTCAAGGCCGGTGCGTTCGACTACCTCACCAAGCCGGTGGA
CCTGCCGCGCCTGCGTGAACTGGTAGGCACGGCCCTGCGGCTGTCCGGGCCTGCCCCGGCGGCGGCCGGCGCCAGCGAAA
CCCAACTGCTCGGCGAATCGCCGCCCATGCGCGCCCTGCGCAACCAGATCGCCAAACTGGCGCGCAGCCAGGCGCCGGTC
TACATCAGCGGCGAATCGGGCAGCGGCAAGGAGCGGGTGGCACGACTGATCCATGAGCAGGGTCCGCGGGCCGGTCGGCC
CTTCGTGCCGGTCAACTGCGGCGCCATCCCCTCGGAGTTGGTGGAAAGCGAATTCTTCGGCCACCGCAAGGGCAGCTTCA
CCGGCGCCATCGAGGACAAGCAGGGTCTGTTCCAGGCCGCCCAGGGCGGCACCCTGTTTCTCGACGAGGTAGCCGATCTG
CCGCTGCCGATGCAGGTCAAGCTCTTGCGCGCCATCCAGGAAAAGGCCGTGCGCCCGGTAGGCAGCCAGCAGGAGATCAG
CCTGGACGTACGCATCCTCAGCGCCACCCACCGGGATCTGGCCGCCGAGGTCGCCGCCGGGACCTTCCGCCAGGACCTCT
ACTATCGCCTCAATGTCATCGAATTGCAGGTGCCGGCCCTGCGCGAGCGCCGCGAAGACATCGGCATCCTGGCCAACCAT
ATGCTCGAACGCCTGGCACGCGACTCCGGCCTGGCCGCGGCCACGCTGGGCGAGGATGCCCTGGCCAAGCTCAAAAGCTA
CCGTTTCCCCGGCAACGTGCGGGAACTGGAAAACATGCTGGAGCGGGCCTACACCCTCTGCGAGGGCGACGTCATCCGCC
CGGCCGATCTGCGCCTGGCCGATGCCCCGGCAGCCACCGCCACCGGCGAAGCCAGCCTGGCCAACATCGCCAATCTGGAA
GACCACCTGGAGTCCATCGAACGCCAGCTGATCATGCAGGCGCTCGAAGAGACCCGCTGGAATCGCACCGCCGCCGCGGA
ACGCCTGGGTCTCTCCTTCCGGTCGATGCGCTACCGACTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A329HJV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.942

100

0.809
  pilR Acinetobacter baumannii strain A118

49.356

100

0.516
  luxO Vibrio cholerae strain A1552

37.783

99.103

0.374

Multiple sequence alignment