Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACN429_RS04750 Genome accession   NZ_CP183397
Coordinates   1022445..1024019 (-) Length   524 a.a.
NCBI ID   WP_044341571.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain CCSM P719     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1017445..1029019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN429_RS04720 (ACN429_04720) - 1017489..1018259 (-) 771 WP_074583965.1 PilW family protein -
  ACN429_RS04725 (ACN429_04725) pilV 1018262..1018777 (-) 516 WP_074583964.1 type IV pilus modification protein PilV -
  ACN429_RS04730 (ACN429_04730) - 1018774..1019283 (-) 510 WP_074583963.1 GspH/FimT family pseudopilin -
  ACN429_RS04735 (ACN429_04735) - 1019399..1019905 (-) 507 WP_074583962.1 GspH/FimT family pseudopilin -
  ACN429_RS04740 (ACN429_04740) - 1020043..1021101 (+) 1059 WP_420030670.1 NAD(P)/FAD-dependent oxidoreductase -
  ACN429_RS04745 (ACN429_04745) pilR 1021102..1022442 (-) 1341 WP_007160808.1 sigma-54-dependent transcriptional regulator Regulator
  ACN429_RS04750 (ACN429_04750) pilS 1022445..1024019 (-) 1575 WP_044341571.1 sensor histidine kinase Regulator
  ACN429_RS04755 (ACN429_04755) - 1024003..1024251 (-) 249 WP_027600187.1 PP0621 family protein -
  ACN429_RS04760 (ACN429_04760) - 1024383..1026005 (+) 1623 WP_377709515.1 NAD+ synthase -
  ACN429_RS04765 (ACN429_04765) - 1026117..1027142 (-) 1026 WP_007160812.1 outer membrane protein assembly factor BamD -
  ACN429_RS04770 (ACN429_04770) rluD 1027331..1028290 (+) 960 WP_027600189.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACN429_RS04775 (ACN429_04775) pgeF 1028287..1029018 (+) 732 WP_420030671.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 57394.12 Da        Isoelectric Point: 7.8577

>NTDB_id=1105529 ACN429_RS04750 WP_044341571.1 1022445..1024019(-) (pilS) [Pseudomonas oryzihabitans strain CCSM P719]
MSTATDPGTLRADAVLRLYHLYRIVIGLALVVLISSDLDQHWLRTVDGQLFRQASWAYLAINAVLAVGQRLLRGRAFTLA
LIDILALGGLFFLAGGIASGMGSLLVVTVGVSNVLIRGRRGLLIAALAAIALLLATGYLDLRRGDSGSGYVQAAGLGTLC
FATALLVQGLVRRLLDSQALAETRATAVAELEALNALILERMRTGILVFDAEYQVLLVNPAARRLLGVDDENTIAPLALG
LAQRLEEWERNPSIRPAPWRAYANGPLLQPSFARLQQGEGERVLTFLEDVSRIAQQAQQLKLASLGRLTAGIAHEIRNPL
GAISHAAQLLQESEELTTPDRRLAQIIQDQSRRMNRVVENVLQLSRRQQAAPQLIDLRYWAHRFAGELRPTLPAGQTLHV
KTEPGTLQTHMDPHQLGQILTNLVQNGLRYSCQKHGIGQVWLSTYRDPESDLPILEVVDDGPGVAAEQLDHLFEPFFTTE
NKGTGLGLYISRELCESNQARLGYHPLANGSCFRITFAHPRTMS

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=1105529 ACN429_RS04750 WP_044341571.1 1022445..1024019(-) (pilS) [Pseudomonas oryzihabitans strain CCSM P719]
ATGAGCACCGCGACTGATCCAGGCACCCTGAGAGCCGACGCGGTCCTGCGGCTCTATCACCTCTATCGCATCGTCATCGG
CCTGGCGCTGGTGGTGCTGATTTCCAGCGACCTGGACCAGCACTGGCTGCGCACCGTCGACGGCCAGCTGTTCCGCCAGG
CCAGCTGGGCCTATCTCGCCATCAACGCCGTGCTGGCGGTCGGCCAGCGGCTGCTGCGCGGCCGCGCCTTCACCCTGGCG
CTGATCGACATCCTCGCCCTGGGCGGCCTGTTCTTCCTGGCCGGCGGCATCGCCAGCGGCATGGGCAGTCTGCTGGTGGT
GACCGTCGGGGTGTCCAACGTCCTGATCCGTGGCCGCCGCGGCCTGCTGATCGCCGCCCTGGCGGCCATCGCCCTGCTGC
TGGCGACCGGCTATCTCGACCTGCGCCGCGGTGACAGTGGCAGTGGCTATGTGCAGGCAGCGGGCCTGGGCACCCTCTGC
TTCGCCACGGCGCTGCTGGTGCAGGGCCTGGTCCGGCGGCTGCTGGACAGCCAGGCCCTGGCCGAAACCCGCGCCACGGC
CGTGGCCGAACTGGAGGCCCTCAACGCCCTGATCCTCGAACGCATGCGGACCGGCATCCTGGTGTTCGACGCCGAATACC
AGGTGCTGCTGGTGAATCCGGCAGCCCGCCGTCTGCTCGGTGTGGACGACGAGAACACCATCGCCCCCCTGGCCCTGGGT
CTCGCCCAGCGCCTCGAGGAATGGGAGCGCAATCCCAGTATCCGGCCGGCGCCCTGGCGCGCCTATGCCAACGGCCCGCT
GTTGCAACCCAGCTTCGCCCGTTTGCAGCAGGGCGAAGGCGAGCGGGTGCTGACCTTTCTCGAAGACGTCTCGCGCATCG
CCCAGCAGGCCCAGCAACTCAAGCTCGCTTCCCTCGGCCGTCTCACCGCTGGCATCGCCCACGAGATCCGCAATCCGCTG
GGCGCCATCAGTCACGCCGCGCAGCTGCTACAGGAATCCGAGGAGCTGACCACGCCGGACCGGCGCCTGGCGCAGATCAT
CCAGGACCAGTCGCGGCGGATGAATCGGGTGGTGGAAAACGTCCTGCAACTGTCTCGCCGCCAGCAGGCCGCCCCTCAGC
TGATCGACCTGCGCTACTGGGCGCACCGCTTCGCCGGGGAGTTGCGCCCTACCCTGCCCGCCGGCCAGACGCTGCACGTC
AAGACCGAGCCGGGCACCCTGCAGACGCACATGGATCCCCACCAACTGGGCCAGATCCTGACCAACCTGGTGCAGAACGG
CCTGCGCTACAGCTGCCAAAAGCACGGCATCGGCCAGGTCTGGCTCAGCACCTACCGCGATCCGGAAAGCGACCTGCCCA
TCCTCGAAGTGGTCGATGACGGACCGGGCGTCGCTGCCGAGCAACTCGACCACCTGTTCGAGCCCTTCTTCACCACCGAG
AACAAGGGGACCGGGCTGGGCCTGTACATCTCCCGTGAGCTTTGCGAGAGCAACCAGGCCAGACTTGGCTATCATCCCTT
GGCGAACGGCAGCTGTTTTCGCATCACCTTCGCCCATCCCCGCACAATGAGCTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(198-237)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(412-517)

His Kinase A (phospho-acceptor) domain (HisKA)

(304-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

99.237

0.595

Multiple sequence alignment