Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN3VN_RS01605 Genome accession   NZ_CP183396
Coordinates   395201..395647 (-) Length   148 a.a.
NCBI ID   WP_058569656.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8074     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 390201..400647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN3VN_RS01585 (ACN3VN_01585) - 390411..390821 (-) 411 WP_058569655.1 MerC domain-containing protein -
  ACN3VN_RS01590 (ACN3VN_01590) - 390979..393024 (+) 2046 WP_010892915.1 TonB-dependent receptor -
  ACN3VN_RS01595 (ACN3VN_01595) - 393593..393745 (+) 153 WP_023906142.1 hypothetical protein -
  ACN3VN_RS01600 (ACN3VN_01600) - 394856..395182 (-) 327 WP_024749194.1 pyocin activator PrtN family protein -
  ACN3VN_RS01605 (ACN3VN_01605) ssb 395201..395647 (-) 447 WP_058569656.1 single-stranded DNA-binding protein Machinery gene
  ACN3VN_RS01610 (ACN3VN_01610) - 395631..395837 (-) 207 WP_233337694.1 hypothetical protein -
  ACN3VN_RS01615 (ACN3VN_01615) - 395837..396367 (-) 531 WP_058569658.1 hypothetical protein -
  ACN3VN_RS01620 (ACN3VN_01620) - 396364..397119 (-) 756 WP_058569659.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  ACN3VN_RS01625 (ACN3VN_01625) - 397212..397745 (-) 534 WP_081044400.1 pilin -
  ACN3VN_RS01630 (ACN3VN_01630) - 397877..398143 (-) 267 WP_058569661.1 hypothetical protein -
  ACN3VN_RS01635 (ACN3VN_01635) - 398140..398418 (-) 279 WP_020853056.1 hypothetical protein -
  ACN3VN_RS01640 (ACN3VN_01640) - 398415..398636 (-) 222 WP_021358638.1 hypothetical protein -
  ACN3VN_RS01645 (ACN3VN_01645) - 398633..399082 (-) 450 WP_058569662.1 hypothetical protein -
  ACN3VN_RS01650 (ACN3VN_01650) - 399079..399543 (-) 465 WP_058569663.1 DUF1566 domain-containing protein -
  ACN3VN_RS01655 (ACN3VN_01655) - 399540..400307 (-) 768 WP_394325689.1 hypothetical protein -
  ACN3VN_RS01660 (ACN3VN_01660) - 400304..400429 (-) 126 WP_394325690.1 hypothetical protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16664.55 Da        Isoelectric Point: 7.3545

>NTDB_id=1105511 ACN3VN_RS01605 WP_058569656.1 395201..395647(-) (ssb) [Xylella fastidiosa strain CFBP8074]
MARGINKVILVGNLGNEPDIKYTQSGMTITNISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYTYAGDDFHDDDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1105511 ACN3VN_RS01605 WP_058569656.1 395201..395647(-) (ssb) [Xylella fastidiosa strain CFBP8074]
ATGGCACGCGGAATTAACAAGGTAATCCTAGTCGGCAACCTGGGGAACGAGCCGGATATCAAATACACCCAAAGCGGTAT
GACGATCACCAACATTAGCCTAGCAACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCCGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACACCACAGCGGCGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATACGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

41.477

100

0.493
  ssb Neisseria meningitidis MC58

38.15

100

0.446
  ssb Neisseria gonorrhoeae MS11

38.15

100

0.446
  ssb Glaesserella parasuis strain SC1401

42.029

93.243

0.392

Multiple sequence alignment