Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACAM39_RS02750 Genome accession   NZ_AP031590
Coordinates   603950..605002 (+) Length   350 a.a.
NCBI ID   WP_369628147.1    Uniprot ID   -
Organism   Moraxella sp. K02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 598950..610002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM39_RS02740 (MOXK02_05270) - 600428..600946 (+) 519 WP_369628145.1 DUF6586 family protein -
  ACAM39_RS02745 (MOXK02_05280) - 601022..603748 (-) 2727 WP_369628146.1 penicillin-binding protein 1A -
  ACAM39_RS02750 (MOXK02_05290) pilM 603950..605002 (+) 1053 WP_369628147.1 pilus assembly protein PilM Machinery gene
  ACAM39_RS02755 (MOXK02_05300) - 605002..605673 (+) 672 WP_135888357.1 PilN domain-containing protein -
  ACAM39_RS02760 (MOXK02_05310) - 605676..606425 (+) 750 WP_369628148.1 type 4a pilus biogenesis protein PilO -
  ACAM39_RS02765 (MOXK02_05320) - 606425..606958 (+) 534 WP_369628149.1 pilus assembly protein PilP -
  ACAM39_RS02770 (MOXK02_05330) pilQ 606976..609330 (+) 2355 WP_369628150.1 type IV pilus secretin PilQ -
  ACAM39_RS02775 (MOXK02_05340) - 609438..609974 (+) 537 WP_160002372.1 shikimate kinase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38313.67 Da        Isoelectric Point: 4.5359

>NTDB_id=110535 ACAM39_RS02750 WP_369628147.1 603950..605002(+) (pilM) [Moraxella sp. K02]
MRLFTKNNKLVVGVDITTTAIKMVEITRQQGLFHLRNYGIEPLPRGAVVDKNIVDIDAVSDALARLSRGSGFSSKHIATA
VSGSSVISKIIEMEADLTELERESRIRLDADQYIPYPLSEVNLDFEVIGPSATPDMCKVLLVASRTENVDQRVDAGALAG
METKIVDVEAYAVERAFQLMVDSLPGQPEHVALIDIGHSQTTLYIAKDGEFVYSREQLFGGAQLTESIQSRYGLTFEEAM
INKRTLSLPDDYYTDVLMPFLDAIVQQITRSLQFYFSSSQNSQVDYILLGGGSASIAGLASMVEQKLGTRTGIANAFSNM
TINNHINTELLIMDAPSLIAACGLALRSFD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=110535 ACAM39_RS02750 WP_369628147.1 603950..605002(+) (pilM) [Moraxella sp. K02]
GTGAGGTTATTTACAAAAAACAACAAGCTAGTCGTTGGGGTAGATATCACCACCACTGCGATAAAAATGGTTGAAATAAC
ACGGCAGCAAGGTCTATTTCATTTAAGAAATTACGGCATTGAACCGTTACCCCGCGGTGCAGTTGTGGATAAAAATATTG
TAGATATTGACGCGGTCAGTGACGCCCTCGCAAGATTATCCCGTGGTAGCGGTTTTTCTAGTAAACATATCGCGACAGCC
GTATCAGGGTCTTCGGTCATTAGCAAAATTATTGAGATGGAAGCGGATCTCACAGAGCTTGAAAGAGAATCTCGTATCCG
TCTGGATGCTGACCAATATATTCCCTATCCTTTATCAGAAGTTAATTTAGATTTTGAAGTGATAGGTCCTTCAGCCACGC
CTGATATGTGTAAGGTATTGTTAGTTGCTTCTCGCACTGAAAACGTCGACCAGCGTGTCGATGCGGGTGCTTTGGCGGGA
ATGGAAACTAAAATTGTGGATGTAGAGGCTTACGCAGTTGAACGCGCCTTTCAATTAATGGTCGATAGCTTGCCAGGTCA
ACCTGAGCATGTAGCCCTCATTGATATCGGGCACAGCCAAACCACACTTTATATTGCAAAAGACGGGGAGTTTGTGTACA
GCCGTGAACAGCTTTTTGGTGGCGCCCAGTTAACTGAAAGTATTCAAAGCCGTTATGGTTTGACGTTCGAGGAGGCGATG
ATTAATAAGCGCACCCTGTCATTGCCAGATGATTACTATACGGATGTATTAATGCCATTTTTAGATGCCATTGTGCAGCA
AATCACCCGCTCGCTGCAGTTTTATTTTTCATCCAGCCAAAATAGCCAAGTAGATTATATTTTGTTGGGTGGGGGCAGTG
CCAGCATTGCGGGTCTAGCAAGCATGGTTGAACAAAAACTTGGTACCCGCACAGGTATTGCCAATGCATTTTCAAATATG
ACGATTAATAACCATATCAACACTGAATTACTGATTATGGACGCGCCAAGCTTAATAGCGGCTTGTGGCTTGGCGTTACG
GAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.567

100

0.517
  comM Acinetobacter nosocomialis M2

50.712

100

0.509
  comM Acinetobacter baylyi ADP1

48.148

100

0.483
  pilM Legionella pneumophila strain ERS1305867

42.776

100

0.431

Multiple sequence alignment