Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN2C7_RS11170 Genome accession   NZ_CP183331
Coordinates   2286398..2286904 (-) Length   168 a.a.
NCBI ID   WP_419317027.1    Uniprot ID   -
Organism   Caulobacter sp. ErkDOM-E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2281398..2291904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2C7_RS11140 (ACN2C7_11140) - 2282504..2283385 (-) 882 WP_419317016.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ACN2C7_RS11145 (ACN2C7_11145) - 2283433..2283759 (-) 327 WP_419317018.1 hypothetical protein -
  ACN2C7_RS11150 (ACN2C7_11150) - 2283839..2284054 (+) 216 WP_419317020.1 DUF1289 domain-containing protein -
  ACN2C7_RS11155 (ACN2C7_11155) - 2284058..2284390 (-) 333 WP_419317021.1 hypothetical protein -
  ACN2C7_RS11160 (ACN2C7_11160) - 2284646..2285161 (+) 516 WP_419317023.1 TIGR02281 family clan AA aspartic protease -
  ACN2C7_RS11165 (ACN2C7_11165) dusA 2285158..2286177 (-) 1020 WP_419317025.1 tRNA dihydrouridine(20/20a) synthase DusA -
  ACN2C7_RS11170 (ACN2C7_11170) ssb 2286398..2286904 (-) 507 WP_419317027.1 single-stranded DNA-binding protein Machinery gene
  ACN2C7_RS11175 (ACN2C7_11175) - 2287035..2287430 (-) 396 WP_419317029.1 hypothetical protein -
  ACN2C7_RS11180 (ACN2C7_11180) - 2287444..2288124 (-) 681 WP_419317031.1 hypothetical protein -
  ACN2C7_RS11185 (ACN2C7_11185) - 2288172..2290991 (-) 2820 WP_419317033.1 hypothetical protein -
  ACN2C7_RS11190 (ACN2C7_11190) pseH 2291070..2291624 (-) 555 WP_419317035.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17759.50 Da        Isoelectric Point: 5.3338

>NTDB_id=1105334 ACN2C7_RS11170 WP_419317027.1 2286398..2286904(-) (ssb) [Caulobacter sp. ErkDOM-E]
MAGSVNKVILVGNLGADPEIRSLGSGDRVANLRIATSESWRDRTSGERKEKTEWHRVVIFNDNLVKVAEQYLRKGSTVYI
EGAIQTRKWTDNTGAEKYSTEIVLQKFRGELTMLGGRGDGAGASSGGGDDGYSSGGGGGGGYGGGAPRSQPSGPRESFSA
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1105334 ACN2C7_RS11170 WP_419317027.1 2286398..2286904(-) (ssb) [Caulobacter sp. ErkDOM-E]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTGGGCAACCTCGGGGCCGATCCCGAAATCCGCAGCCTGGGTTCCGGTGA
CCGCGTCGCCAATCTGCGCATCGCCACCTCGGAAAGCTGGCGCGACCGCACCTCGGGCGAGCGCAAGGAAAAGACCGAAT
GGCACCGGGTCGTGATCTTCAACGACAATCTGGTGAAGGTGGCCGAGCAGTATCTGCGCAAGGGCTCGACGGTCTATATC
GAGGGCGCGATCCAGACCCGCAAATGGACCGACAACACCGGCGCTGAAAAGTATTCCACCGAGATCGTGCTGCAGAAGTT
CCGCGGTGAACTGACCATGCTGGGCGGTCGCGGCGACGGCGCAGGCGCCTCGTCGGGCGGTGGCGATGACGGCTACTCCA
GCGGTGGCGGTGGCGGTGGCGGCTATGGCGGCGGCGCGCCGCGCAGCCAGCCTAGCGGTCCGCGCGAGAGCTTCTCGGCC
GACCTCGACGACGAAATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

100

0.518
  ssb Glaesserella parasuis strain SC1401

45.604

100

0.494
  ssb Neisseria gonorrhoeae MS11

40.217

100

0.44
  ssb Neisseria meningitidis MC58

39.444

100

0.423

Multiple sequence alignment