Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNVED_RS01675 Genome accession   NZ_CP183303
Coordinates   359038..359517 (-) Length   159 a.a.
NCBI ID   WP_419420031.1    Uniprot ID   -
Organism   Legionella sp. D16C41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 354038..364517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNVED_RS01645 (ACNVED_01645) rpsM 354161..354517 (+) 357 WP_419420025.1 30S ribosomal protein S13 -
  ACNVED_RS01650 (ACNVED_01650) rpsK 354536..354934 (+) 399 WP_419420026.1 30S ribosomal protein S11 -
  ACNVED_RS01655 (ACNVED_01655) rpsD 354951..355571 (+) 621 WP_419420027.1 30S ribosomal protein S4 -
  ACNVED_RS01660 (ACNVED_01660) - 355591..356583 (+) 993 WP_419420028.1 DNA-directed RNA polymerase subunit alpha -
  ACNVED_RS01665 (ACNVED_01665) rplQ 356599..356985 (+) 387 WP_419420029.1 50S ribosomal protein L17 -
  ACNVED_RS01670 (ACNVED_01670) - 357180..358595 (+) 1416 WP_419420030.1 exonuclease domain-containing protein -
  ACNVED_RS01675 (ACNVED_01675) ssb 359038..359517 (-) 480 WP_419420031.1 single-stranded DNA-binding protein Machinery gene
  ACNVED_RS01680 (ACNVED_01680) - 359599..360960 (-) 1362 WP_419420032.1 MFS transporter -
  ACNVED_RS01685 (ACNVED_01685) - 361371..362120 (+) 750 WP_419420033.1 SDR family NAD(P)-dependent oxidoreductase -
  ACNVED_RS01690 (ACNVED_01690) fabL 362230..362985 (+) 756 WP_419420034.1 enoyl-[acyl-carrier-protein] reductase FabL -
  ACNVED_RS01695 (ACNVED_01695) - 363140..363556 (+) 417 WP_419420035.1 acyl carrier protein -
  ACNVED_RS01700 (ACNVED_01700) - 363556..364458 (+) 903 WP_419420036.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17708.58 Da        Isoelectric Point: 5.0022

>NTDB_id=1105166 ACNVED_RS01675 WP_419420031.1 359038..359517(-) (ssb) [Legionella sp. D16C41]
MARGINKVILIGNVGSDPEVRYMPNGNAVATLSIATSETWKDKQSGDKQERTEWHRVVCFNRLGEIAGEFVRKGSKLYIE
GSLRTRKWQDQQGQDRYTTEIIATDVQMLDSKGGSSVGYDDAQSAAAPQHQQQPAYQQPTNRKGTADDVFAELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1105166 ACNVED_RS01675 WP_419420031.1 359038..359517(-) (ssb) [Legionella sp. D16C41]
ATGGCTCGCGGAATTAATAAAGTTATCTTAATTGGTAATGTTGGTAGTGATCCTGAAGTCAGATATATGCCTAATGGTAA
TGCTGTGGCTACCCTATCAATTGCAACAAGTGAAACGTGGAAAGATAAGCAAAGTGGAGATAAACAAGAGCGTACCGAAT
GGCACCGCGTTGTTTGTTTCAATCGCCTAGGTGAAATTGCAGGTGAATTTGTACGTAAAGGTTCTAAGCTATATATTGAA
GGAAGCTTACGTACTCGTAAATGGCAGGATCAGCAGGGTCAAGATCGCTACACTACCGAAATTATTGCAACTGATGTACA
AATGCTTGATAGTAAAGGCGGGAGCTCAGTAGGTTATGATGATGCTCAGTCAGCTGCTGCACCACAACACCAGCAACAGC
CTGCTTATCAGCAACCAACTAACCGTAAAGGCACTGCTGACGATGTCTTTGCTGAATTAGACGATGATATTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.108

100

0.56
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.56
  ssb Neisseria meningitidis MC58

41.954

100

0.459
  ssb Neisseria gonorrhoeae MS11

41.954

100

0.459

Multiple sequence alignment