Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ACN08S_RS26375 Genome accession   NZ_CP183265
Coordinates   3146411..3147010 (+) Length   199 a.a.
NCBI ID   WP_419209547.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sr2.36     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3141411..3152010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08S_RS26355 (ACN08S_26230) - 3142859..3143329 (+) 471 WP_008987478.1 RDD family protein -
  ACN08S_RS26360 (ACN08S_26235) - 3143369..3144268 (-) 900 WP_045065407.1 lysine exporter LysO family protein -
  ACN08S_RS26365 (ACN08S_26240) - 3144469..3145392 (-) 924 WP_419209545.1 HDOD domain-containing protein -
  ACN08S_RS26370 (ACN08S_26245) - 3145516..3146100 (-) 585 WP_419209546.1 LON peptidase substrate-binding domain-containing protein -
  ACN08S_RS26375 (ACN08S_26250) tfoX 3146411..3147010 (+) 600 WP_419209547.1 TfoX/Sxy family DNA transformation protein Regulator
  ACN08S_RS26380 (ACN08S_26255) dsdC 3147100..3148020 (+) 921 WP_061014857.1 DNA-binding transcriptional regulator DsdC -
  ACN08S_RS26385 (ACN08S_26260) - 3148100..3149092 (-) 993 WP_419209548.1 2-hydroxyacid dehydrogenase -
  ACN08S_RS26390 (ACN08S_26265) - 3149307..3150623 (+) 1317 WP_419209549.1 DUF945 family protein -
  ACN08S_RS26395 (ACN08S_26270) - 3150863..3151279 (+) 417 WP_008987470.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22721.28 Da        Isoelectric Point: 8.4613

>NTDB_id=1104944 ACN08S_RS26375 WP_419209547.1 3146411..3147010(+) (tfoX) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
MTSLKDDYLNYLNKFGEQEKRSMFGGTGVFIDGAMFAIVTPASMYIRGGEKLDPQLVKLGCSKFKHIKKSKTATVNYYEI
RELFEKDPQTCSELVAKSIEFSCKDKAYKQSGSNKRLRDLPNMRLTLERMVKKAGVLDVAAFLELGALNVYRKVCEHNGQ
ELDRKLLWIFAGAVEGCHWQLLTDDFKENLLEQYHCVAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1104944 ACN08S_RS26375 WP_419209547.1 3146411..3147010(+) (tfoX) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
GTGACATCACTTAAGGACGATTACTTAAACTATTTAAATAAATTCGGAGAACAAGAAAAGCGATCCATGTTTGGTGGTAC
GGGTGTGTTTATTGATGGGGCAATGTTTGCCATTGTGACCCCAGCGTCTATGTATATCCGTGGCGGCGAAAAATTGGATC
CACAATTAGTAAAGTTAGGATGCTCAAAGTTTAAACATATTAAAAAAAGTAAAACCGCAACCGTGAACTACTACGAGATA
AGAGAGCTTTTTGAAAAAGATCCACAAACGTGTAGTGAATTGGTTGCTAAATCAATTGAGTTTTCATGTAAGGATAAAGC
GTATAAGCAGTCTGGTTCGAATAAGCGTCTACGTGATTTACCTAATATGAGACTGACGTTAGAGCGTATGGTGAAAAAAG
CAGGTGTATTGGATGTTGCTGCTTTTCTTGAGTTAGGTGCGTTAAATGTTTACCGAAAAGTGTGTGAACATAACGGACAA
GAGCTCGATCGTAAGCTGTTATGGATTTTTGCTGGGGCGGTAGAAGGTTGTCATTGGCAATTATTAACCGATGATTTTAA
AGAAAATCTACTAGAGCAATACCACTGCGTCGCGAATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Aliivibrio fischeri ES114

50.777

96.985

0.492
  tfoX Vibrio campbellii strain DS40M4

52.174

92.462

0.482
  tfoX Vibrio parahaemolyticus RIMD 2210633

52.174

92.462

0.482
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

51.351

92.965

0.477
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

51.351

92.965

0.477
  tfoX Vibrio cholerae strain A1552

51.351

92.965

0.477
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

51.351

92.965

0.477
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

51.351

92.965

0.477

Multiple sequence alignment