Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ACN08Q_RS18285 Genome accession   NZ_CP183255
Coordinates   2152790..2153389 (-) Length   199 a.a.
NCBI ID   WP_008987474.1    Uniprot ID   A0A2T3KYL5
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sr1.18     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2147790..2158389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08Q_RS18265 (ACN08Q_18215) - 2148521..2148937 (-) 417 WP_008987470.1 CBS domain-containing protein -
  ACN08Q_RS18270 (ACN08Q_18220) - 2149177..2150493 (-) 1317 WP_305369582.1 DUF945 family protein -
  ACN08Q_RS18275 (ACN08Q_18225) - 2150708..2151700 (+) 993 WP_419237823.1 2-hydroxyacid dehydrogenase -
  ACN08Q_RS18280 (ACN08Q_18230) dsdC 2151780..2152700 (-) 921 WP_061014857.1 DNA-binding transcriptional regulator DsdC -
  ACN08Q_RS18285 (ACN08Q_18235) tfoX 2152790..2153389 (-) 600 WP_008987474.1 TfoX/Sxy family DNA transformation protein Regulator
  ACN08Q_RS18290 (ACN08Q_18240) - 2153697..2154284 (+) 588 WP_419237824.1 LON peptidase substrate-binding domain-containing protein -
  ACN08Q_RS18295 (ACN08Q_18245) - 2154408..2155331 (+) 924 WP_419237825.1 HDOD domain-containing protein -
  ACN08Q_RS18300 (ACN08Q_18250) - 2155532..2156431 (+) 900 WP_419237826.1 lysine exporter LysO family protein -
  ACN08Q_RS18305 (ACN08Q_18255) - 2156491..2156961 (-) 471 WP_008987478.1 RDD family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22705.28 Da        Isoelectric Point: 8.4613

>NTDB_id=1104901 ACN08Q_RS18285 WP_008987474.1 2152790..2153389(-) (tfoX) [Photobacterium leiognathi subsp. mandapamensis strain Sr1.18]
MTSLKDDYLNYLNKFGEQEKRSMFGGTGVFIDGAMFAIVTPASMYIRGGEKLDPQLVKLGCSKFKHIKKSKTATVNYYEI
RELFEKDPQTCSELVAKSIEFSCKDKAYKQSGANKRLRDLPNMRLTLERMVKKAGVLDVAAFLELGALNVYRKVCEHNGQ
ELDRKLLWIFAGAVEGCHWQLLTDDFKENLLEQYHCVAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1104901 ACN08Q_RS18285 WP_008987474.1 2152790..2153389(-) (tfoX) [Photobacterium leiognathi subsp. mandapamensis strain Sr1.18]
GTGACATCACTTAAGGACGATTACTTAAACTATTTAAATAAATTCGGAGAACAAGAAAAGCGATCCATGTTTGGTGGTAC
GGGTGTGTTTATTGATGGGGCAATGTTTGCCATTGTGACCCCAGCGTCTATGTATATCCGTGGCGGCGAAAAGTTGGATC
CACAATTAGTAAAGTTAGGATGCTCAAAGTTTAAACATATTAAAAAAAGTAAAACCGCAACCGTGAACTACTACGAGATA
AGAGAGCTTTTTGAAAAAGATCCACAAACGTGTAGTGAATTGGTTGCTAAATCAATTGAGTTTTCATGTAAGGATAAAGC
GTATAAGCAGTCTGGTGCGAATAAGCGTCTACGTGATTTACCTAATATGAGACTGACGTTAGAGCGTATGGTGAAAAAAG
CAGGTGTATTGGATGTTGCTGCTTTTCTGGAGTTAGGTGCGTTAAATGTTTACCGAAAAGTGTGTGAACATAACGGACAA
GAACTCGATCGTAAGCTGCTATGGATTTTTGCTGGTGCGGTAGAAGGTTGTCATTGGCAATTATTAACCGATGATTTTAA
AGAAAATCTACTAGAGCAATACCACTGCGTCGCGAATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3KYL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Aliivibrio fischeri ES114

50.777

96.985

0.492
  tfoX Vibrio campbellii strain DS40M4

52.717

92.462

0.487
  tfoX Vibrio parahaemolyticus RIMD 2210633

52.717

92.462

0.487
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

51.892

92.965

0.482
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

51.892

92.965

0.482
  tfoX Vibrio cholerae strain A1552

51.892

92.965

0.482
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

51.892

92.965

0.482
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

51.892

92.965

0.482

Multiple sequence alignment