Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN08Q_RS09660 Genome accession   NZ_CP183255
Coordinates   322482..323027 (+) Length   181 a.a.
NCBI ID   WP_008987834.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sr1.18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 317482..328027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08Q_RS09645 (ACN08Q_09615) - 317928..320054 (-) 2127 WP_419237119.1 GumC family protein -
  ACN08Q_RS09650 (ACN08Q_09620) - 320076..320615 (-) 540 WP_081091484.1 polysaccharide biosynthesis/export family protein -
  ACN08Q_RS09655 (ACN08Q_09625) - 320612..321805 (-) 1194 WP_008987833.1 outer membrane beta-barrel protein -
  ACN08Q_RS09660 (ACN08Q_09630) ssb 322482..323027 (+) 546 WP_008987834.1 single-stranded DNA-binding protein Machinery gene
  ACN08Q_RS09665 (ACN08Q_09635) - 323092..323973 (-) 882 WP_419237120.1 LysR family transcriptional regulator -
  ACN08Q_RS09670 (ACN08Q_09640) csrD 324200..326119 (+) 1920 WP_008987836.1 RNase E specificity factor CsrD -
  ACN08Q_RS09675 (ACN08Q_09645) - 326303..327778 (+) 1476 WP_419237121.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20075.07 Da        Isoelectric Point: 4.9059

>NTDB_id=1104884 ACN08Q_RS09660 WP_008987834.1 322482..323027(+) (ssb) [Photobacterium leiognathi subsp. mandapamensis strain Sr1.18]
MASRGINKVILVGNLGNDPEVRYMPNGGAVANITIATSESWRDKNTGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGTMQMLGGRQNQGNQPMGGGQQQQGGGWGQPQQPAAQSYAPQQQQQQQAPAQ
QPAPQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1104884 ACN08Q_RS09660 WP_008987834.1 322482..323027(+) (ssb) [Photobacterium leiognathi subsp. mandapamensis strain Sr1.18]
ATGGCCAGTCGTGGCATTAATAAGGTTATCTTAGTCGGTAACTTAGGAAATGATCCTGAAGTCCGTTACATGCCAAACGG
CGGTGCGGTAGCGAATATTACCATTGCGACATCAGAATCATGGCGTGATAAGAACACCGGTGAACAACGCGAAAAAACTG
AATGGCACCGCGTTGCTTTATACGGAAAATTAGCTGAAGTTGCAGGTGAGTACCTACGTAAAGGCTCTCAAGTATACATT
GAAGGTCAATTACAAACGCGTAAGTGGCAGAACCAGCAAGGTCAAGATCAGTACACAACTGAAGTGGTTGTTCAAGGCTT
TAACGGCACAATGCAAATGCTTGGCGGTCGTCAAAACCAAGGTAATCAACCAATGGGTGGCGGTCAGCAGCAACAAGGTG
GTGGTTGGGGTCAACCTCAACAGCCTGCAGCACAAAGCTATGCACCACAACAGCAGCAACAGCAACAAGCACCAGCTCAA
CAACCTGCACCTCAACCGCAGTACAACGAGCCACCAATGGATTTTGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.596

100

0.785
  ssb Glaesserella parasuis strain SC1401

54.167

100

0.575
  ssb Neisseria meningitidis MC58

47.283

100

0.481
  ssb Neisseria gonorrhoeae MS11

47.283

100

0.481

Multiple sequence alignment