Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ACN08M_RS11990 Genome accession   NZ_CP183250
Coordinates   2564789..2565388 (+) Length   199 a.a.
NCBI ID   WP_008987474.1    Uniprot ID   A0A2T3KYL5
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sc16.3     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2559789..2570388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08M_RS11970 (ACN08M_11970) - 2561217..2561687 (+) 471 WP_023931714.1 RDD family protein -
  ACN08M_RS11975 (ACN08M_11975) - 2561747..2562646 (-) 900 WP_419239893.1 lysine exporter LysO family protein -
  ACN08M_RS11980 (ACN08M_11980) - 2562847..2563770 (-) 924 WP_060988849.1 HDOD domain-containing protein -
  ACN08M_RS11985 (ACN08M_11985) - 2563894..2564481 (-) 588 WP_318401185.1 LON peptidase substrate-binding domain-containing protein -
  ACN08M_RS11990 (ACN08M_11990) tfoX 2564789..2565388 (+) 600 WP_008987474.1 TfoX/Sxy family DNA transformation protein Regulator
  ACN08M_RS11995 (ACN08M_11995) dsdC 2565478..2566398 (+) 921 WP_419239894.1 DNA-binding transcriptional regulator DsdC -
  ACN08M_RS12000 (ACN08M_12000) - 2566478..2567470 (-) 993 WP_305838653.1 2-hydroxyacid dehydrogenase -
  ACN08M_RS12005 (ACN08M_12005) - 2567685..2569001 (+) 1317 WP_419239895.1 DUF945 family protein -
  ACN08M_RS12010 (ACN08M_12010) - 2569241..2569657 (+) 417 WP_008987470.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22705.28 Da        Isoelectric Point: 8.4613

>NTDB_id=1104866 ACN08M_RS11990 WP_008987474.1 2564789..2565388(+) (tfoX) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
MTSLKDDYLNYLNKFGEQEKRSMFGGTGVFIDGAMFAIVTPASMYIRGGEKLDPQLVKLGCSKFKHIKKSKTATVNYYEI
RELFEKDPQTCSELVAKSIEFSCKDKAYKQSGANKRLRDLPNMRLTLERMVKKAGVLDVAAFLELGALNVYRKVCEHNGQ
ELDRKLLWIFAGAVEGCHWQLLTDDFKENLLEQYHCVAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1104866 ACN08M_RS11990 WP_008987474.1 2564789..2565388(+) (tfoX) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
GTGACATCACTTAAGGACGATTACTTAAACTATTTAAATAAATTCGGAGAACAAGAAAAGCGATCCATGTTTGGTGGTAC
GGGTGTGTTTATTGATGGGGCAATGTTTGCCATTGTGACCCCAGCGTCTATGTATATCCGTGGCGGCGAAAAGTTGGATC
CACAATTAGTAAAGTTAGGATGCTCAAAGTTTAAACATATTAAAAAAAGTAAAACCGCAACCGTTAACTACTACGAGATA
AGAGAGCTTTTTGAAAAAGATCCACAAACGTGTAGTGAATTGGTTGCTAAATCAATTGAGTTTTCATGTAAGGATAAAGC
GTATAAGCAGTCTGGTGCGAATAAGCGTCTACGTGATTTACCTAATATGAGACTGACGTTAGAGCGTATGGTGAAAAAAG
CAGGTGTATTGGATGTTGCTGCTTTTCTCGAGTTAGGTGCGTTAAATGTTTACCGAAAAGTGTGTGAACATAACGGACAA
GAGCTCGATCGTAAGCTGTTATGGATTTTTGCTGGTGCGGTAGAAGGTTGTCATTGGCAATTATTAACCGATGATTTTAA
AGAAAATCTACTAGAGCAATATCACTGCGTCGCGAATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3KYL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Aliivibrio fischeri ES114

50.777

96.985

0.492
  tfoX Vibrio campbellii strain DS40M4

52.717

92.462

0.487
  tfoX Vibrio parahaemolyticus RIMD 2210633

52.717

92.462

0.487
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

51.892

92.965

0.482
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

51.892

92.965

0.482
  tfoX Vibrio cholerae strain A1552

51.892

92.965

0.482
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

51.892

92.965

0.482
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

51.892

92.965

0.482

Multiple sequence alignment