Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN08M_RS05355 Genome accession   NZ_CP183250
Coordinates   1092764..1093309 (-) Length   181 a.a.
NCBI ID   WP_008987834.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sc16.3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1087764..1098309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08M_RS05340 (ACN08M_05340) - 1088013..1089488 (-) 1476 WP_419239422.1 PilN domain-containing protein -
  ACN08M_RS05345 (ACN08M_05345) csrD 1089672..1091591 (-) 1920 WP_107279183.1 RNase E specificity factor CsrD -
  ACN08M_RS05350 (ACN08M_05350) - 1091818..1092699 (+) 882 WP_419239423.1 LysR family transcriptional regulator -
  ACN08M_RS05355 (ACN08M_05355) ssb 1092764..1093309 (-) 546 WP_008987834.1 single-stranded DNA-binding protein Machinery gene
  ACN08M_RS05360 (ACN08M_05360) - 1093986..1095179 (+) 1194 WP_060989277.1 outer membrane beta-barrel protein -
  ACN08M_RS05365 (ACN08M_05365) - 1095176..1095715 (+) 540 WP_107234120.1 polysaccharide biosynthesis/export family protein -
  ACN08M_RS05370 (ACN08M_05370) - 1095737..1097863 (+) 2127 WP_419239424.1 GumC family protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20075.07 Da        Isoelectric Point: 4.9059

>NTDB_id=1104850 ACN08M_RS05355 WP_008987834.1 1092764..1093309(-) (ssb) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
MASRGINKVILVGNLGNDPEVRYMPNGGAVANITIATSESWRDKNTGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGTMQMLGGRQNQGNQPMGGGQQQQGGGWGQPQQPAAQSYAPQQQQQQQAPAQ
QPAPQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1104850 ACN08M_RS05355 WP_008987834.1 1092764..1093309(-) (ssb) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
ATGGCCAGTCGTGGCATTAATAAGGTTATCTTAGTCGGTAACTTAGGAAATGATCCTGAAGTCCGTTACATGCCAAACGG
CGGTGCGGTAGCGAATATTACCATTGCGACATCAGAATCATGGCGTGATAAGAACACCGGTGAACAACGCGAAAAAACTG
AATGGCACCGCGTTGCTTTATACGGAAAATTAGCTGAAGTTGCAGGTGAGTACCTACGTAAAGGCTCTCAAGTATACATT
GAAGGTCAACTACAAACGCGTAAGTGGCAGAACCAGCAAGGTCAAGATCAGTACACAACTGAAGTGGTTGTTCAAGGCTT
TAACGGCACAATGCAAATGCTTGGCGGTCGTCAAAACCAAGGTAATCAACCAATGGGTGGCGGTCAGCAGCAACAAGGTG
GTGGTTGGGGTCAACCTCAACAGCCTGCAGCACAAAGCTATGCACCACAACAGCAGCAACAGCAACAAGCACCAGCTCAA
CAACCTGCACCTCAACCGCAGTACAACGAGCCACCAATGGATTTTGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.596

100

0.785
  ssb Glaesserella parasuis strain SC1401

54.167

100

0.575
  ssb Neisseria meningitidis MC58

47.283

100

0.481
  ssb Neisseria gonorrhoeae MS11

47.283

100

0.481

Multiple sequence alignment