Detailed information NTG1104827

Bioinformatically predicted

Overview

• Name: tfoX
• Type: Regulator
• Locus tag: ACN08T_RS11965
• Genome accession: NZ_CP183248
• Coordinates: 2509864..2510463 (-)
• Length: 199 a.a.
• NCBI ID: WP_008987474.1
• Uniprot ID: A0A2T3KYL5
• Organism: Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a
• Function: master regulator of natural competence (predicted from homology) Competence regulation

Genomic Context

Location: 2504864..2515463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN08T_RS11945 (ACN08T_11945)	-	2505595..2506011 (-)	417	WP_008987470.1	CBS domain-containing protein	-
ACN08T_RS11950 (ACN08T_11950)	-	2506251..2507567 (-)	1317	WP_238092710.1	DUF945 family protein	-
ACN08T_RS11955 (ACN08T_11955)	-	2507782..2508774 (+)	993	WP_008987472.1	2-hydroxyacid dehydrogenase	-
ACN08T_RS11960 (ACN08T_11960)	dsdC	2508854..2509774 (-)	921	WP_061014857.1	DNA-binding transcriptional regulator DsdC	-
ACN08T_RS11965 (ACN08T_11965)	tfoX	2509864..2510463 (-)	600	WP_008987474.1	TfoX/Sxy family DNA transformation protein	Regulator
ACN08T_RS11970 (ACN08T_11970)	-	2510771..2511358 (+)	588	WP_419205856.1	LON peptidase substrate-binding domain-containing protein	-
ACN08T_RS11975 (ACN08T_11975)	-	2511482..2512405 (+)	924	WP_419205857.1	HDOD domain-containing protein	-
ACN08T_RS11980 (ACN08T_11980)	-	2512500..2513525 (+)	1026	WP_419205121.1	IS110 family transposase	-
ACN08T_RS11985 (ACN08T_11985)	-	2513928..2514827 (+)	900	WP_318443762.1	lysine exporter LysO family protein	-
ACN08T_RS11990 (ACN08T_11990)	-	2514887..2515357 (-)	471	WP_419205858.1	RDD family protein	-

Sequence

Protein

• Length: 199 a.a.
• Molecular weight: 22705.28 Da
• Isoelectric Point: 8.4613

>NTDB_id=1104827 ACN08T_RS11965 WP_008987474.1 2509864..2510463(-) (tfoX) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
MTSLKDDYLNYLNKFGEQEKRSMFGGTGVFIDGAMFAIVTPASMYIRGGEKLDPQLVKLGCSKFKHIKKSKTATVNYYEI
RELFEKDPQTCSELVAKSIEFSCKDKAYKQSGANKRLRDLPNMRLTLERMVKKAGVLDVAAFLELGALNVYRKVCEHNGQ
ELDRKLLWIFAGAVEGCHWQLLTDDFKENLLEQYHCVAN

Nucleotide

• Length: 600 bp

>NTDB_id=1104827 ACN08T_RS11965 WP_008987474.1 2509864..2510463(-) (tfoX) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
GTGACATCACTTAAGGACGATTACTTAAACTATTTAAATAAATTCGGAGAACAAGAAAAGCGATCCATGTTTGGTGGTAC
GGGTGTGTTTATTGATGGGGCAATGTTTGCCATTGTGACCCCAGCGTCTATGTATATCCGTGGCGGCGAAAAATTGGATC
CACAATTAGTAAAGTTAGGATGCTCAAAGTTTAAACATATTAAAAAAAGTAAAACCGCAACCGTGAACTACTACGAGATA
AGAGAGCTTTTTGAAAAAGATCCACAAACGTGTAGTGAATTGGTTGCTAAATCAATTGAGTTCTCATGTAAGGATAAAGC
GTATAAGCAGTCTGGTGCGAATAAGCGTCTACGTGATTTACCTAATATGAGACTGACGTTAGAGCGTATGGTGAAAAAAG
CAGGTGTATTGGATGTTGCTGCTTTTCTTGAGTTAGGTGCGTTAAATGTTTACCGAAAAGTGTGTGAACATAACGGACAA
GAGCTCGATCGTAAGCTGTTATGGATTTTTGCTGGTGCGGTAGAAGGTTGTCATTGGCAATTATTAACCGATGATTTTAA
AGAAAATCTACTAGAGCAATACCACTGCGTCGCGAATTAA

Domains

Predicted by InterproScan.

• TfoX C-terminal domain (TfoX_C) (114-193)

• TfoX N-terminal domain (TfoX_N) (11-101)

3D structure

• AlphaFold DB: A0A2T3KYL5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tfoX	Aliivibrio fischeri ES114	50.777	96.985	0.492
tfoX	Vibrio campbellii strain DS40M4	52.717	92.462	0.487
tfoX	Vibrio parahaemolyticus RIMD 2210633	52.717	92.462	0.487
tfoX	Vibrio cholerae O1 biovar El Tor strain E7946	51.892	92.965	0.482
tfoX	Vibrio cholerae O1 biovar El Tor str. N16961	51.892	92.965	0.482
tfoX	Vibrio cholerae strain A1552	51.892	92.965	0.482
tfoX	Vibrio cholerae O1 biovar El Tor strain DRC-193A	51.892	92.965	0.482
tfoX	Vibrio cholerae O1 biovar El Tor strain P27459	51.892	92.965	0.482