Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN08T_RS03435 Genome accession   NZ_CP183248
Coordinates   702650..703195 (+) Length   181 a.a.
NCBI ID   WP_008987834.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 697650..708195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08T_RS03420 (ACN08T_03420) - 698096..700222 (-) 2127 WP_419205195.1 GumC family protein -
  ACN08T_RS03425 (ACN08T_03425) - 700244..700783 (-) 540 WP_081091484.1 polysaccharide biosynthesis/export family protein -
  ACN08T_RS03430 (ACN08T_03430) - 700780..701973 (-) 1194 WP_008987833.1 outer membrane beta-barrel protein -
  ACN08T_RS03435 (ACN08T_03435) ssb 702650..703195 (+) 546 WP_008987834.1 single-stranded DNA-binding protein Machinery gene
  ACN08T_RS03440 (ACN08T_03440) - 703260..704141 (-) 882 WP_419205196.1 LysR family transcriptional regulator -
  ACN08T_RS03445 (ACN08T_03445) csrD 704368..706287 (+) 1920 WP_107184560.1 RNase E specificity factor CsrD -
  ACN08T_RS03450 (ACN08T_03450) - 706471..707946 (+) 1476 WP_419205197.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20075.07 Da        Isoelectric Point: 4.9059

>NTDB_id=1104810 ACN08T_RS03435 WP_008987834.1 702650..703195(+) (ssb) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
MASRGINKVILVGNLGNDPEVRYMPNGGAVANITIATSESWRDKNTGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGTMQMLGGRQNQGNQPMGGGQQQQGGGWGQPQQPAAQSYAPQQQQQQQAPAQ
QPAPQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1104810 ACN08T_RS03435 WP_008987834.1 702650..703195(+) (ssb) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
ATGGCCAGTCGTGGCATTAATAAGGTTATCTTAGTCGGTAACTTAGGAAATGATCCTGAAGTCCGTTACATGCCAAACGG
CGGTGCGGTAGCGAATATTACCATTGCGACATCAGAATCATGGCGTGATAAGAACACCGGTGAACAACGCGAAAAAACTG
AATGGCACCGCGTTGCTTTATACGGAAAATTAGCTGAAGTTGCAGGTGAGTACCTACGTAAAGGCTCTCAAGTATACATT
GAAGGTCAATTACAAACGCGTAAGTGGCAGAACCAGCAAGGTCAAGATCAGTACACAACTGAAGTGGTTGTTCAAGGCTT
TAACGGCACAATGCAAATGCTTGGCGGTCGTCAAAACCAAGGTAATCAACCAATGGGTGGCGGTCAGCAGCAACAAGGTG
GTGGTTGGGGTCAACCTCAACAGCCTGCAGCACAAAGCTATGCACCACAACAGCAGCAACAGCAACAAGCACCAGCTCAA
CAACCTGCACCTCAACCGCAGTACAACGAGCCACCAATGGATTTTGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.596

100

0.785
  ssb Glaesserella parasuis strain SC1401

54.167

100

0.575
  ssb Neisseria meningitidis MC58

47.283

100

0.481
  ssb Neisseria gonorrhoeae MS11

47.283

100

0.481

Multiple sequence alignment