Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNS8M_RS00550 Genome accession   NZ_CP183239
Coordinates   131276..131851 (+) Length   191 a.a.
NCBI ID   WP_168461690.1    Uniprot ID   -
Organism   Acinetobacter sp. A2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 126276..136851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNS8M_RS00535 (ACNS8M_00525) tenA 127553..128227 (-) 675 WP_419225005.1 thiaminase II -
  ACNS8M_RS00540 (ACNS8M_00530) - 128557..129642 (+) 1086 WP_419225006.1 DUF475 domain-containing protein -
  ACNS8M_RS00545 (ACNS8M_00535) - 129860..131224 (+) 1365 WP_419225007.1 MFS transporter -
  ACNS8M_RS00550 (ACNS8M_00540) ssb 131276..131851 (+) 576 WP_168461690.1 single-stranded DNA-binding protein Machinery gene
  ACNS8M_RS00555 (ACNS8M_00545) ahpC 132086..132649 (+) 564 WP_168542602.1 alkyl hydroperoxide reductase subunit C -
  ACNS8M_RS00560 (ACNS8M_00550) - 132851..133735 (+) 885 WP_168419451.1 pirin family protein -
  ACNS8M_RS00565 (ACNS8M_00555) - 134158..135465 (+) 1308 WP_194558151.1 FAD-dependent oxidoreductase -
  ACNS8M_RS00570 (ACNS8M_00560) - 135794..136624 (+) 831 WP_325781591.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21025.77 Da        Isoelectric Point: 6.4800

>NTDB_id=1104719 ACNS8M_RS00550 WP_168461690.1 131276..131851(+) (ssb) [Acinetobacter sp. A2]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSGNRGQSDQQDGGFAQPRFNNNQSGYGNQNQGQAAGYGNQNQGGFNQNQGG
GYANNNPSGFAPKPQAAPATAPADLDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1104719 ACNS8M_RS00550 WP_168461690.1 131276..131851(+) (ssb) [Acinetobacter sp. A2]
ATGCGTGGTGTAAATAAAGTCATTTTAGTCGGTACTTTAGGTCGCGATCCTGAAACAAAAACTTTCCCAAATGGGGGTTC
TCTCACCCAATTTTCTATCGCAACCAGTGATGTCTGGACAGACAAAAATACGGGCGAGCGTAAAGAGCAAACAGAGTGGC
ACCGTATTGTGTTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTACGCAAAGGTTCTAAGGTATATATTGAAGGT
TCATTGCGTACTCGTCAGTGGACAGACCAAAACGGTCAAGAGCGTTACACCACTGAAATTCGTGGTGATCAAATGCAAAT
GCTCGATTCAGGTAATCGTGGACAATCTGACCAACAAGATGGCGGTTTTGCACAGCCACGGTTTAACAATAACCAAAGTG
GCTATGGTAATCAGAATCAAGGTCAGGCTGCGGGTTATGGCAACCAAAATCAAGGTGGTTTTAACCAAAATCAGGGTGGT
GGCTATGCCAACAATAACCCAAGTGGTTTTGCACCGAAGCCGCAAGCTGCGCCTGCAACCGCACCAGCAGATTTAGATGA
TGATCTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.736

100

0.555
  ssb Vibrio cholerae strain A1552

43.5

100

0.455
  ssb Neisseria meningitidis MC58

40.212

98.953

0.398
  ssb Neisseria gonorrhoeae MS11

40.212

98.953

0.398

Multiple sequence alignment