Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACAK36_RS12970 Genome accession   NZ_AP031585
Coordinates   2670575..2671705 (-) Length   376 a.a.
NCBI ID   WP_049590070.1    Uniprot ID   A0A7X5LV61
Organism   Acinetobacter baumannii strain JUNP543     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2665575..2676705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK36_RS12945 (JUNP543_2587) - 2665750..2666514 (-) 765 WP_049590036.1 AraC family transcriptional regulator -
  ACAK36_RS12950 (JUNP543_2588) - 2666536..2667750 (-) 1215 WP_163093704.1 MFS transporter -
  ACAK36_RS12955 (JUNP543_2589) - 2667887..2668537 (+) 651 WP_086222322.1 TetR/AcrR family transcriptional regulator -
  ACAK36_RS12960 (JUNP543_2590) - 2668643..2669563 (+) 921 WP_000084546.1 DMT family transporter -
  ACAK36_RS12965 (JUNP543_2591) - 2669955..2670524 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  ACAK36_RS12970 (JUNP543_2592) dprA 2670575..2671705 (-) 1131 WP_049590070.1 DNA-processing protein DprA Machinery gene
  ACAK36_RS12975 (JUNP543_2593) tsaP 2671726..2672880 (-) 1155 WP_049590038.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACAK36_RS12980 (JUNP543_2594) def 2673003..2673533 (+) 531 WP_001196539.1 peptide deformylase -
  ACAK36_RS12985 (JUNP543_2595) - 2673570..2673998 (+) 429 WP_000231981.1 DUF2946 family protein -
  ACAK36_RS12990 (JUNP543_2596) - 2674071..2676185 (+) 2115 WP_049590039.1 TonB-dependent copper receptor -
  ACAK36_RS12995 (JUNP543_2597) - 2676239..2676445 (+) 207 WP_000182542.1 hypothetical protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41944.46 Da        Isoelectric Point: 6.5815

>NTDB_id=110463 ACAK36_RS12970 WP_049590070.1 2670575..2671705(-) (dprA) [Acinetobacter baumannii strain JUNP543]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEETNTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=110463 ACAK36_RS12970 WP_049590070.1 2670575..2671705(-) (dprA) [Acinetobacter baumannii strain JUNP543]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTTAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGCCAGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTAGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCCACTCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAACTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7X5LV61

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

99.468

100

0.995

  dprA Acinetobacter baumannii D1279779

98.67

100

0.987

  dprA Acinetobacter baylyi ADP1

70.604

100

0.715

  dprA Vibrio cholerae strain A1552

43.505

88.032

0.383


Multiple sequence alignment