Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACN08J_RS09210 | Genome accession | NZ_CP183211 |
| Coordinates | 1821289..1821816 (-) | Length | 175 a.a. |
| NCBI ID | WP_002833866.1 | Uniprot ID | A0A0R2H8I2 |
| Organism | Pediococcus pentosaceus strain NIBL1955 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1816289..1826816
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN08J_RS09190 (ACN08J_09190) | dnaB | 1816922..1818319 (-) | 1398 | WP_002833870.1 | replicative DNA helicase | - |
| ACN08J_RS09195 (ACN08J_09195) | rplI | 1818368..1818820 (-) | 453 | WP_023439730.1 | 50S ribosomal protein L9 | - |
| ACN08J_RS09200 (ACN08J_09200) | - | 1818826..1820826 (-) | 2001 | WP_023439729.1 | DHH family phosphoesterase | - |
| ACN08J_RS09205 (ACN08J_09205) | rpsR | 1821029..1821265 (-) | 237 | WP_002833867.1 | 30S ribosomal protein S18 | - |
| ACN08J_RS09210 (ACN08J_09210) | ssb | 1821289..1821816 (-) | 528 | WP_002833866.1 | single-stranded DNA-binding protein | Machinery gene |
| ACN08J_RS09215 (ACN08J_09215) | rpsF | 1821852..1822136 (-) | 285 | WP_023439728.1 | 30S ribosomal protein S6 | - |
| ACN08J_RS09220 (ACN08J_09220) | gyrA | 1822382..1824862 (-) | 2481 | WP_330857699.1 | DNA gyrase subunit A | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19144.68 Da Isoelectric Point: 4.7512
>NTDB_id=1104529 ACN08J_RS09210 WP_002833866.1 1821289..1821816(-) (ssb) [Pediococcus pentosaceus strain NIBL1955]
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NGGQSIDISDDDLPF
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NGGQSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=1104529 ACN08J_RS09210 WP_002833866.1 1821289..1821816(-) (ssb) [Pediococcus pentosaceus strain NIBL1955]
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATGGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATGGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
67.582 |
100 |
0.703 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.286 |
100 |
0.623 |
| ssb | Glaesserella parasuis strain SC1401 |
33.871 |
100 |
0.36 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |