Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACAK36_RS10355 Genome accession   NZ_AP031585
Coordinates   2117601..2118419 (-) Length   272 a.a.
NCBI ID   WP_049581040.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JUNP543     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2112601..2123419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK36_RS10340 (JUNP543_2070) pilE 2112818..2113243 (-) 426 WP_000788346.1 type IV pilin protein Machinery gene
  ACAK36_RS10345 (JUNP543_2071) pilY2 2113240..2113722 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ACAK36_RS10350 (JUNP543_2072) pilY1 2113735..2117589 (-) 3855 WP_000768950.1 PilC/PilY family type IV pilus protein Machinery gene
  ACAK36_RS10355 (JUNP543_2073) pilX 2117601..2118419 (-) 819 WP_049581040.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACAK36_RS10360 (JUNP543_2074) pilW 2118416..2119417 (-) 1002 WP_049581042.1 PilW family protein Machinery gene
  ACAK36_RS10365 (JUNP543_2075) pilV 2119418..2119978 (-) 561 WP_087486632.1 type IV pilus modification protein PilV Machinery gene
  ACAK36_RS10370 (JUNP543_2076) fimU 2119972..2120445 (-) 474 WP_049581046.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACAK36_RS10375 (JUNP543_2077) ispH 2120615..2121565 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACAK36_RS10380 (JUNP543_2078) gmk 2121688..2122317 (+) 630 WP_000015937.1 guanylate kinase -
  ACAK36_RS10385 (JUNP543_2079) rpoZ 2122390..2122668 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACAK36_RS10390 - 2122707..2122837 (+) 131 Protein_2039 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28818.63 Da        Isoelectric Point: 5.6905

>NTDB_id=110450 ACAK36_RS10355 WP_049581040.1 2117601..2118419(-) (pilX) [Acinetobacter baumannii strain JUNP543]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAVVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=110450 ACAK36_RS10355 WP_049581040.1 2117601..2118419(-) (pilX) [Acinetobacter baumannii strain JUNP543]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGGTTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCAGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment