Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACNT2N_RS00225 | Genome accession | NZ_CP183197 |
| Coordinates | 49876..50745 (+) | Length | 289 a.a. |
| NCBI ID | WP_053125328.1 | Uniprot ID | A0A176NQ85 |
| Organism | Pseudomonas thivervalensis strain NFX106 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 44876..55745
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACNT2N_RS00200 (ACNT2N_00200) | - | 45038..45334 (+) | 297 | WP_053125321.1 | DUF2845 domain-containing protein | - |
| ACNT2N_RS00205 (ACNT2N_00205) | - | 45669..46022 (-) | 354 | WP_053125323.1 | BON domain-containing protein | - |
| ACNT2N_RS00210 (ACNT2N_00210) | - | 46310..46729 (-) | 420 | WP_053125419.1 | pilin | - |
| ACNT2N_RS00215 (ACNT2N_00215) | pilB | 46954..48654 (+) | 1701 | WP_053187360.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACNT2N_RS00220 (ACNT2N_00220) | pilC | 48657..49874 (+) | 1218 | WP_053125326.1 | type II secretion system F family protein | Machinery gene |
| ACNT2N_RS00225 (ACNT2N_00225) | pilD | 49876..50745 (+) | 870 | WP_053125328.1 | prepilin peptidase | Machinery gene |
| ACNT2N_RS00230 (ACNT2N_00230) | coaE | 50758..51381 (+) | 624 | WP_053187369.1 | dephospho-CoA kinase | - |
| ACNT2N_RS00235 (ACNT2N_00235) | yacG | 51378..51584 (+) | 207 | WP_208665753.1 | DNA gyrase inhibitor YacG | - |
| ACNT2N_RS00240 (ACNT2N_00240) | - | 51731..51946 (-) | 216 | WP_053125334.1 | hypothetical protein | - |
| ACNT2N_RS00245 (ACNT2N_00245) | - | 52010..52696 (-) | 687 | WP_053125337.1 | energy-coupling factor ABC transporter permease | - |
| ACNT2N_RS00250 (ACNT2N_00250) | - | 52716..53129 (-) | 414 | WP_053125339.1 | tautomerase family protein | - |
| ACNT2N_RS00255 (ACNT2N_00255) | - | 53283..54176 (+) | 894 | WP_208665754.1 | LysR substrate-binding domain-containing protein | - |
| ACNT2N_RS00260 (ACNT2N_00260) | - | 54395..55021 (+) | 627 | WP_025215531.1 | DUF1780 domain-containing protein | - |
| ACNT2N_RS00265 (ACNT2N_00265) | - | 55018..55545 (+) | 528 | WP_053125343.1 | MOSC domain-containing protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32006.07 Da Isoelectric Point: 7.0172
>NTDB_id=1104438 ACNT2N_RS00225 WP_053125328.1 49876..50745(+) (pilD) [Pseudomonas thivervalensis strain NFX106]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLDREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCDHRIR
AWENIPVFSYVMLRGRCSSCAAPIGRRYPLTELTCGALSGFVAWHFGFGWQAGMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLDQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTLLLSSLVG
AIIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLDREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCDHRIR
AWENIPVFSYVMLRGRCSSCAAPIGRRYPLTELTCGALSGFVAWHFGFGWQAGMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLDQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTLLLSSLVG
AIIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=1104438 ACNT2N_RS00225 WP_053125328.1 49876..50745(+) (pilD) [Pseudomonas thivervalensis strain NFX106]
ATGCCCCTGAGCGAATTTTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCGGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGACCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCAGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGACCATCGCATCCGC
GCCTGGGAAAACATCCCGGTGTTCAGCTACGTGATGTTGCGTGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCACTGACCGAATTGACCTGCGGCGCGTTGTCGGGGTTCGTCGCCTGGCATTTCGGCTTCGGCTGGCAAGCCGGCA
TGGTGATGGTGTTGACCTGGGGTCTGCTGGGCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGACACCTTGGTG
TTACCGTTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTGTTCGTCTCCCTGGACCAGGCGATGTGGGGCGCGGT
GGCCGGTTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACTGGCAAGGAAGGCATGGGCTATGGGGACT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGGTCCTGCCGCTGACGCTGCTGTTGTCGTCGCTGGTGGGC
GCCATTATCGGGGTCATTGTGTTGCGCCTGCGAGACGCTCCAGGGTCAACGCAAATCCCCTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
ATGCCCCTGAGCGAATTTTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCGGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGACCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCAGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGACCATCGCATCCGC
GCCTGGGAAAACATCCCGGTGTTCAGCTACGTGATGTTGCGTGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCACTGACCGAATTGACCTGCGGCGCGTTGTCGGGGTTCGTCGCCTGGCATTTCGGCTTCGGCTGGCAAGCCGGCA
TGGTGATGGTGTTGACCTGGGGTCTGCTGGGCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGACACCTTGGTG
TTACCGTTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTGTTCGTCTCCCTGGACCAGGCGATGTGGGGCGCGGT
GGCCGGTTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACTGGCAAGGAAGGCATGGGCTATGGGGACT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGGTCCTGCCGCTGACGCTGCTGTTGTCGTCGCTGGTGGGC
GCCATTATCGGGGTCATTGTGTTGCGCCTGCGAGACGCTCCAGGGTCAACGCAAATCCCCTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
51.761 |
98.27 |
0.509 |
| pilD | Vibrio campbellii strain DS40M4 |
51.228 |
98.616 |
0.505 |
| pilD | Acinetobacter baumannii D1279779 |
48.754 |
97.232 |
0.474 |
| pilD | Acinetobacter nosocomialis M2 |
48.043 |
97.232 |
0.467 |
| pilD | Neisseria gonorrhoeae MS11 |
47.038 |
99.308 |
0.467 |