Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACNM7T_RS19930 Genome accession   NZ_CP183041
Coordinates   3998559..3999077 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus amyloliquefaciens strain Scm     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3993559..4004077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM7T_RS19900 (ACNM7T_19900) - 3994761..3995141 (-) 381 WP_015418645.1 VOC family protein -
  ACNM7T_RS19905 (ACNM7T_19905) - 3995198..3996136 (-) 939 WP_012118935.1 LacI family DNA-binding transcriptional regulator -
  ACNM7T_RS19910 (ACNM7T_19910) xth 3996199..3996957 (-) 759 WP_007409893.1 exodeoxyribonuclease III -
  ACNM7T_RS19915 (ACNM7T_19915) - 3996954..3997511 (-) 558 WP_032870836.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ACNM7T_RS19920 (ACNM7T_19920) - 3997508..3998089 (-) 582 WP_020958118.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  ACNM7T_RS19925 (ACNM7T_19925) rpsR 3998276..3998515 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  ACNM7T_RS19930 (ACNM7T_19930) ssbA 3998559..3999077 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACNM7T_RS19935 (ACNM7T_19935) rpsF 3999117..3999404 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  ACNM7T_RS19940 (ACNM7T_19940) ychF 3999516..4000616 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  ACNM7T_RS19945 (ACNM7T_19945) - 4000743..4002746 (-) 2004 WP_061046520.1 molybdopterin-dependent oxidoreductase -
  ACNM7T_RS19950 (ACNM7T_19950) - 4002793..4002999 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1103825 ACNM7T_RS19930 WP_004392979.1 3998559..3999077(-) (ssbA) [Bacillus amyloliquefaciens strain Scm]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1103825 ACNM7T_RS19930 WP_004392979.1 3998559..3999077(-) (ssbA) [Bacillus amyloliquefaciens strain Scm]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTCACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment