Detailed information NTG1103404

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACNH6H_RS06825
• Genome accession: NZ_CP182947
• Coordinates: 1527465..1528319 (+)
• Length: 284 a.a.
• NCBI ID: WP_418321258.1
• Uniprot ID: -
• Organism: Piscinibacter sakaiensis strain 201-F6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1522465..1533319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNH6H_RS06805 (ACNH6H_06805)	ispB	1523073..1524014 (+)	942	WP_418321256.1	octaprenyl diphosphate synthase	-
ACNH6H_RS06815 (ACNH6H_06815)	pilB	1524366..1526090 (+)	1725	WP_418316723.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACNH6H_RS06820 (ACNH6H_06820)	pilC	1526230..1527450 (+)	1221	WP_418316725.1	type II secretion system F family protein	Machinery gene
ACNH6H_RS06825 (ACNH6H_06825)	pilD	1527465..1528319 (+)	855	WP_418321258.1	prepilin peptidase	Machinery gene
ACNH6H_RS06830 (ACNH6H_06830)	coaE	1528330..1528947 (+)	618	WP_418316727.1	dephospho-CoA kinase	-
ACNH6H_RS06835 (ACNH6H_06835)	zapD	1529041..1529796 (+)	756	WP_418316729.1	cell division protein ZapD	-
ACNH6H_RS06840 (ACNH6H_06840)	-	1529811..1530026 (+)	216	WP_418316731.1	DNA gyrase inhibitor YacG	-
ACNH6H_RS06845 (ACNH6H_06845)	-	1530057..1530830 (-)	774	WP_418316733.1	ferredoxin--NADP reductase	-
ACNH6H_RS06850 (ACNH6H_06850)	-	1531132..1531422 (+)	291	WP_418316734.1	co-chaperone GroES	-
ACNH6H_RS06855 (ACNH6H_06855)	groL	1531523..1533172 (+)	1650	WP_418316736.1	chaperonin GroEL	-

Sequence

Protein

• Length: 284 a.a.
• Molecular weight: 30542.40 Da
• Isoelectric Point: 7.9353

>NTDB_id=1103404 ACNH6H_RS06825 WP_418321258.1 1527465..1528319(+) (pilD) [Piscinibacter sakaiensis strain 201-F6]
MPPPEWLYSPWLLAVLGLAIGSFLNVVIHRLPLILERQWKADSADMLGLPAPSDDTDRPMTLSRPRSHCPACKQPIPWTS
NIPLISYLVLRGRCGACGVSIPLRYPLVEVLCALLFALVAWRFGAQPVALLWCGFVAALVALAGIDWDTTLLPDDITLPL
LWAGLIAAALGWTIPLSQALWGAVAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAWLGASMIVPIVLAASVFGAVV
GIGMKFANSLREGRYVPFGPFLAAAGIAIVLLGEPRVLGWLGWA

Nucleotide

• Length: 855 bp

>NTDB_id=1103404 ACNH6H_RS06825 WP_418321258.1 1527465..1528319(+) (pilD) [Piscinibacter sakaiensis strain 201-F6]
ATGCCGCCACCGGAGTGGTTGTATTCGCCGTGGCTGCTGGCCGTGCTCGGCCTGGCGATCGGCAGTTTTCTGAATGTCGT
GATCCACCGCCTGCCGCTGATCCTCGAGCGGCAGTGGAAGGCCGACAGTGCCGACATGCTCGGCCTGCCCGCGCCGTCCG
ACGACACCGACCGGCCGATGACGCTGTCGCGGCCGCGGTCGCACTGCCCGGCGTGCAAGCAGCCGATTCCGTGGACCAGC
AATATTCCACTGATCAGCTACCTCGTCTTGCGCGGCCGTTGTGGCGCCTGTGGCGTCTCGATCCCATTGCGTTATCCGCT
GGTCGAGGTGTTGTGCGCGCTGCTGTTCGCACTGGTTGCCTGGCGCTTCGGCGCGCAACCGGTGGCGCTGCTGTGGTGCG
GCTTTGTCGCCGCACTGGTTGCGCTGGCGGGCATCGACTGGGATACGACGCTGCTGCCCGACGACATCACGCTGCCGCTG
CTGTGGGCCGGGCTGATCGCCGCCGCGCTCGGCTGGACGATCCCGCTGTCGCAGGCGCTGTGGGGCGCGGTCGCCGGCTA
CCTCTCGTTGTGGTCGGTGTACTGGCTGTTCAAGCTCGCAACGGGCAAGGAAGGCATGGGTTACGGCGACTTCAAGCTGC
TGGCCGCGCTTGGCGCCTGGCTCGGCGCATCGATGATCGTGCCAATCGTGCTCGCCGCATCGGTGTTCGGCGCGGTGGTC
GGTATCGGGATGAAGTTCGCCAATTCGCTTCGCGAGGGCCGCTATGTGCCGTTCGGCCCGTTTCTCGCCGCCGCAGGCAT
CGCGATCGTGTTGCTCGGGGAACCGCGGGTGCTCGGCTGGCTCGGATGGGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-242)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.237	99.648	0.511
pilD	Vibrio campbellii strain DS40M4	46.809	99.296	0.465
pilD	Acinetobacter nosocomialis M2	46.863	95.423	0.447
pilD	Acinetobacter baumannii D1279779	46.494	95.423	0.444
pilD	Neisseria gonorrhoeae MS11	49.02	89.789	0.44