Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACAK32_RS05750 | Genome accession | NZ_AP031580 |
| Coordinates | 1175634..1175735 (+) | Length | 33 a.a. |
| NCBI ID | WP_168713084.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain JUNP419 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1110533..1176471 | 1175634..1175735 | within | 0 |
Gene organization within MGE regions
Location: 1110533..1176471
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACAK32_RS05430 (JUNP419_1098) | - | 1110934..1111494 (-) | 561 | WP_001048150.1 | hypothetical protein | - |
| ACAK32_RS05435 (JUNP419_1099) | - | 1111585..1112445 (-) | 861 | WP_000838098.1 | pirin family protein | - |
| ACAK32_RS05440 (JUNP419_1100) | hemJ | 1112616..1113068 (-) | 453 | WP_000339889.1 | protoporphyrinogen oxidase HemJ | - |
| ACAK32_RS05445 (JUNP419_1101) | - | 1113087..1114316 (-) | 1230 | WP_000832710.1 | beta-ketoacyl-ACP synthase II | - |
| ACAK32_RS05450 (JUNP419_1102) | - | 1114613..1115938 (+) | 1326 | WP_000160011.1 | EcsC family protein | - |
| ACAK32_RS05455 (JUNP419_1103) | rpsL | 1116139..1116513 (+) | 375 | WP_000246374.1 | 30S ribosomal protein S12 | - |
| ACAK32_RS05460 (JUNP419_1104) | rpsG | 1116673..1117143 (+) | 471 | WP_001138055.1 | 30S ribosomal protein S7 | - |
| ACAK32_RS05465 (JUNP419_1105) | fusA | 1117322..1119460 (+) | 2139 | WP_000113824.1 | elongation factor G | - |
| ACAK32_RS05470 (JUNP419_1106) | tuf | 1119555..1120745 (+) | 1191 | WP_001029610.1 | elongation factor Tu | - |
| ACAK32_RS05475 (JUNP419_1107) | - | 1120949..1121830 (+) | 882 | WP_000992305.1 | metal-dependent hydrolase | - |
| ACAK32_RS05480 (JUNP419_1108) | - | 1122067..1122942 (+) | 876 | WP_000992291.1 | metal-dependent hydrolase | - |
| ACAK32_RS05485 (JUNP419_1109) | rimI | 1123051..1123506 (+) | 456 | WP_000621543.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| ACAK32_RS05490 (JUNP419_1110) | - | 1123551..1124366 (-) | 816 | WP_000844343.1 | arginyltransferase | - |
| ACAK32_RS05495 (JUNP419_1111) | aat | 1124385..1125116 (-) | 732 | WP_000854785.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| ACAK32_RS05500 (JUNP419_1112) | trxB | 1125236..1126183 (-) | 948 | WP_001276144.1 | thioredoxin-disulfide reductase | - |
| ACAK32_RS05505 (JUNP419_1113) | - | 1126453..1129485 (+) | 3033 | WP_000127823.1 | DNA translocase FtsK | - |
| ACAK32_RS05510 (JUNP419_1114) | rhtC | 1129635..1130255 (+) | 621 | WP_000959259.1 | threonine export protein RhtC | - |
| ACAK32_RS05515 (JUNP419_1115) | - | 1130311..1130841 (-) | 531 | WP_031969348.1 | tyrosyl-tRNA synthetase | - |
| ACAK32_RS05520 (JUNP419_1116) | - | 1130793..1131095 (-) | 303 | WP_024435458.1 | hypothetical protein | - |
| ACAK32_RS05525 (JUNP419_1117) | - | 1131243..1131530 (-) | 288 | WP_001218560.1 | PA4642 family protein | - |
| ACAK32_RS05530 (JUNP419_1118) | minE | 1131614..1131886 (-) | 273 | WP_000896934.1 | cell division topological specificity factor MinE | - |
| ACAK32_RS05535 (JUNP419_1119) | minD | 1131889..1132701 (-) | 813 | WP_001074362.1 | septum site-determining protein MinD | - |
| ACAK32_RS05540 (JUNP419_1120) | minC | 1132772..1133494 (-) | 723 | WP_000763677.1 | septum site-determining protein MinC | - |
| ACAK32_RS05545 (JUNP419_1121) | - | 1133616..1134662 (-) | 1047 | WP_001181639.1 | hypothetical protein | - |
| ACAK32_RS05550 (JUNP419_1122) | - | 1134679..1135605 (-) | 927 | WP_000100965.1 | acyltransferase | - |
| ACAK32_RS05555 (JUNP419_1123) | - | 1135850..1136503 (+) | 654 | WP_001202415.1 | OmpA family protein | - |
| ACAK32_RS05560 (JUNP419_1124) | rep | 1136697..1138736 (+) | 2040 | WP_000093035.1 | DNA helicase Rep | - |
| ACAK32_RS05565 (JUNP419_1125) | dut | 1138761..1139213 (+) | 453 | WP_000868152.1 | dUTP diphosphatase | - |
| ACAK32_RS05570 (JUNP419_1126) | - | 1139413..1140831 (+) | 1419 | WP_001102845.1 | phosphomannomutase/phosphoglucomutase | - |
| ACAK32_RS05575 (JUNP419_1127) | argB | 1140846..1141754 (+) | 909 | WP_001135419.1 | acetylglutamate kinase | - |
| ACAK32_RS05580 (JUNP419_1128) | - | 1141875..1142657 (+) | 783 | WP_000890283.1 | GNAT family N-acetyltransferase | - |
| ACAK32_RS05585 (JUNP419_1129) | - | 1142766..1143614 (+) | 849 | WP_000336548.1 | class II glutamine amidotransferase | - |
| ACAK32_RS05590 (JUNP419_1130) | - | 1143867..1144322 (+) | 456 | WP_000782976.1 | bacteriohemerythrin | - |
| ACAK32_RS05595 (JUNP419_1131) | - | 1144475..1145542 (+) | 1068 | WP_002019572.1 | hypothetical protein | - |
| ACAK32_RS05600 (JUNP419_1132) | - | 1145542..1145865 (+) | 324 | WP_000442587.1 | RnfH family protein | - |
| ACAK32_RS05605 (JUNP419_1133) | - | 1145920..1146318 (-) | 399 | WP_001170994.1 | outer membrane protein assembly factor BamE | - |
| ACAK32_RS05610 (JUNP419_1134) | fur | 1146430..1146867 (+) | 438 | WP_001122847.1 | ferric iron uptake transcriptional regulator | - |
| ACAK32_RS05615 (JUNP419_1135) | pilU | 1146937..1148055 (-) | 1119 | WP_000347039.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACAK32_RS05620 (JUNP419_1136) | pilT | 1148083..1149120 (-) | 1038 | WP_000355489.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACAK32_RS05625 (JUNP419_1137) | - | 1149247..1149939 (+) | 693 | WP_001108512.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACAK32_RS05630 (JUNP419_1138) | - | 1150141..1153737 (-) | 3597 | WP_000698785.1 | SbcC/MukB-like Walker B domain-containing protein | - |
| ACAK32_RS05635 (JUNP419_1139) | - | 1153747..1155015 (-) | 1269 | WP_000116701.1 | exonuclease SbcCD subunit D | - |
| ACAK32_RS05640 (JUNP419_1140) | - | 1155179..1155652 (+) | 474 | WP_000974358.1 | OsmC family protein | - |
| ACAK32_RS05645 (JUNP419_1141) | - | 1155720..1156097 (-) | 378 | WP_001059438.1 | VOC family protein | - |
| ACAK32_RS05650 (JUNP419_1142) | - | 1156477..1156929 (+) | 453 | WP_000164153.1 | ABZJ_00895 family protein | - |
| ACAK32_RS05655 (JUNP419_1143) | - | 1157019..1157924 (+) | 906 | WP_001039356.1 | TIGR01777 family oxidoreductase | - |
| ACAK32_RS05660 (JUNP419_1144) | - | 1157916..1159031 (-) | 1116 | WP_000546701.1 | FAD-binding oxidoreductase | - |
| ACAK32_RS05665 (JUNP419_1145) | hemB | 1159057..1160070 (-) | 1014 | WP_000222569.1 | porphobilinogen synthase | - |
| ACAK32_RS05670 (JUNP419_1146) | - | 1160213..1160710 (+) | 498 | WP_002019577.1 | thioesterase family protein | - |
| ACAK32_RS05675 (JUNP419_1147) | - | 1160980..1162131 (+) | 1152 | WP_000128703.1 | EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit | - |
| ACAK32_RS05680 (JUNP419_1148) | - | 1162138..1163661 (+) | 1524 | WP_000857095.1 | DHA2 family efflux MFS transporter permease subunit | - |
| ACAK32_RS05685 (JUNP419_1149) | ggt | 1163964..1165949 (+) | 1986 | WP_001042923.1 | gamma-glutamyltransferase | - |
| ACAK32_RS05695 (JUNP419_1151) | - | 1166651..1167880 (+) | 1230 | WP_001991065.1 | tyrosine-type recombinase/integrase | - |
| ACAK32_RS05700 (JUNP419_1152) | - | 1168028..1168795 (+) | 768 | WP_000578618.1 | hypothetical protein | - |
| ACAK32_RS05705 (JUNP419_1153) | - | 1169005..1169220 (+) | 216 | WP_000153154.1 | hypothetical protein | - |
| ACAK32_RS05710 (JUNP419_1154) | - | 1169223..1169432 (+) | 210 | WP_001016479.1 | helix-turn-helix domain-containing protein | - |
| ACAK32_RS05715 (JUNP419_1155) | - | 1169429..1169983 (+) | 555 | WP_001988245.1 | BRO family protein | - |
| ACAK32_RS05720 (JUNP419_1156) | - | 1169976..1170344 (+) | 369 | WP_001046481.1 | hypothetical protein | - |
| ACAK32_RS05725 (JUNP419_1157) | - | 1170354..1170659 (+) | 306 | WP_000787149.1 | hypothetical protein | - |
| ACAK32_RS05730 (JUNP419_1158) | - | 1170781..1171059 (+) | 279 | WP_001064707.1 | hypothetical protein | - |
| ACAK32_RS05735 (JUNP419_1159) | - | 1171072..1173537 (+) | 2466 | WP_001022397.1 | DUF927 domain-containing protein | - |
| ACAK32_RS05740 | - | 1173871..1173987 (+) | 117 | WP_001992235.1 | single-stranded DNA-binding protein | - |
| ACAK32_RS05745 (JUNP419_1160) | - | 1174210..1175652 (+) | 1443 | WP_369599814.1 | hypothetical protein | - |
| ACAK32_RS05750 | ssb | 1175634..1175735 (+) | 102 | WP_168713084.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 33 a.a. Molecular weight: 3621.22 Da Isoelectric Point: 9.7265
>NTDB_id=110269 ACAK32_RS05750 WP_168713084.1 1175634..1175735(+) (ssb) [Acinetobacter baumannii strain JUNP419]
MVSSQLAEISSKYLKKGGKVYVEGSLCTGKWKD
MVSSQLAEISSKYLKKGGKVYVEGSLCTGKWKD
Nucleotide
Download Length: 102 bp
>NTDB_id=110269 ACAK32_RS05750 WP_168713084.1 1175634..1175735(+) (ssb) [Acinetobacter baumannii strain JUNP419]
TTGGTTAGTTCCCAATTAGCCGAGATTTCCAGTAAGTACCTTAAGAAAGGTGGCAAGGTTTATGTTGAGGGTTCATTGTG
TACTGGGAAGTGGAAAGACTAA
TTGGTTAGTTCCCAATTAGCCGAGATTTCCAGTAAGTACCTTAAGAAAGGTGGCAAGGTTTATGTTGAGGGTTCATTGTG
TACTGGGAAGTGGAAAGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
62.963 |
81.818 |
0.515 |
| ssb | Vibrio cholerae strain A1552 |
55.172 |
87.879 |
0.485 |
| ssb | Neisseria gonorrhoeae MS11 |
53.571 |
84.848 |
0.455 |
| ssb | Neisseria meningitidis MC58 |
53.571 |
84.848 |
0.455 |