Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACAK30_RS18990 Genome accession   NZ_AP031579
Coordinates   3971785..3972111 (-) Length   108 a.a.
NCBI ID   WP_002126519.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JUNP406     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3970417..3980020 3971785..3972111 within 0


Gene organization within MGE regions


Location: 3970417..3980020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK30_RS18985 (JUNP406_3785) - 3970417..3970680 (+) 264 WP_000018128.1 metal/formaldehyde-sensitive transcriptional repressor -
  ACAK30_RS18990 (JUNP406_3786) ssb 3971785..3972111 (-) 327 WP_002126519.1 single-stranded DNA-binding protein Machinery gene
  ACAK30_RS18995 (JUNP406_3787) - 3972365..3974794 (-) 2430 WP_004745132.1 DUF927 domain-containing protein -
  ACAK30_RS19000 (JUNP406_3788) - 3974787..3975080 (-) 294 WP_004745131.1 hypothetical protein -
  ACAK30_RS19115 - 3975073..3975318 (-) 246 WP_046693185.1 hypothetical protein -
  ACAK30_RS19010 (JUNP406_3789) - 3975465..3975788 (-) 324 WP_004745129.1 hypothetical protein -
  ACAK30_RS19015 (JUNP406_3790) - 3975799..3976167 (-) 369 WP_004745127.1 hypothetical protein -
  ACAK30_RS19020 (JUNP406_3791) - 3976160..3976669 (-) 510 WP_004745126.1 BRO family protein -
  ACAK30_RS19025 (JUNP406_3792) - 3976666..3976875 (-) 210 WP_004745125.1 helix-turn-helix domain-containing protein -
  ACAK30_RS19030 (JUNP406_3793) - 3976878..3977114 (-) 237 WP_004745124.1 AlpA family transcriptional regulator -
  ACAK30_RS19035 (JUNP406_3794) - 3977832..3978692 (-) 861 WP_004745122.1 KilA-N domain-containing protein -
  ACAK30_RS19040 (JUNP406_3795) - 3978764..3980020 (-) 1257 WP_004745119.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12234.94 Da        Isoelectric Point: 10.2394

>NTDB_id=110247 ACAK30_RS18990 WP_002126519.1 3971785..3972111(-) (ssb) [Acinetobacter baumannii strain JUNP406]
MPNVNKVTVMGVLGRDPETKQFPNGGSVTTFSVATTEFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYIEG
SLRTRKWKDSKGAEKEITEIRADEMQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=110247 ACAK30_RS18990 WP_002126519.1 3971785..3972111(-) (ssb) [Acinetobacter baumannii strain JUNP406]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTACTAGGTCGTGACCCTGAAACTAAACAATTTCCCAACGGCGGAAG
CGTTACCACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACTACAGGCGAGCGTAAAGAAGCTACAGAGTGGC
ATAGAATCACCACCAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTGTATATCGAAGGC
TCATTGCGTACAAGGAAGTGGAAGGACAGCAAAGGGGCGGAAAAGGAAATAACCGAGATTCGAGCAGATGAGATGCAATT
GCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.556
  ssb Neisseria gonorrhoeae MS11

51.887

98.148

0.509
  ssb Neisseria meningitidis MC58

51.887

98.148

0.509
  ssb Vibrio cholerae strain A1552

54.639

89.815

0.491

Multiple sequence alignment