Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACNFKI_RS16500 Genome accession   NZ_CP182571
Coordinates   3270966..3271610 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain DY201     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3265966..3276610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKI_RS16465 (ACNFKI_16465) - 3267151..3267582 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  ACNFKI_RS16470 (ACNFKI_16470) - 3267582..3267923 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  ACNFKI_RS16475 (ACNFKI_16475) - 3267916..3269397 (+) 1482 WP_418134074.1 Na+/H+ antiporter subunit D -
  ACNFKI_RS16480 (ACNFKI_16480) - 3269403..3269879 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  ACNFKI_RS16485 (ACNFKI_16485) - 3269879..3270163 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  ACNFKI_RS16490 (ACNFKI_16490) mnhG 3270147..3270521 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ACNFKI_RS16495 (ACNFKI_16495) - 3270561..3270944 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  ACNFKI_RS16500 (ACNFKI_16500) comA 3270966..3271610 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ACNFKI_RS16505 (ACNFKI_16505) comP 3271691..3273994 (-) 2304 WP_003152050.1 sensor histidine kinase Regulator
  ACNFKI_RS16510 (ACNFKI_16510) comX 3274014..3274184 (-) 171 WP_003152048.1 competence pheromone ComX Regulator
  ACNFKI_RS16515 (ACNFKI_16515) comQ 3274147..3275079 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  ACNFKI_RS16520 (ACNFKI_16520) degQ 3275264..3275404 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACNFKI_RS16525 (ACNFKI_16525) - 3275870..3276211 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1102297 ACNFKI_RS16500 WP_003152052.1 3270966..3271610(-) (comA) [Bacillus velezensis strain DY201]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1102297 ACNFKI_RS16500 WP_003152052.1 3270966..3271610(-) (comA) [Bacillus velezensis strain DY201]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment