Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACAK30_RS04395 | Genome accession | NZ_AP031579 |
| Coordinates | 921554..922672 (-) | Length | 372 a.a. |
| NCBI ID | WP_000347040.1 | Uniprot ID | A0A809JLP7 |
| Organism | Acinetobacter baumannii strain JUNP406 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 885394..951086 | 921554..922672 | within | 0 |
Gene organization within MGE regions
Location: 885394..951086
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACAK30_RS04215 (JUNP406_0837) | - | 885795..886355 (-) | 561 | WP_001048354.1 | hypothetical protein | - |
| ACAK30_RS04220 (JUNP406_0838) | - | 886446..887306 (-) | 861 | WP_046693151.1 | pirin family protein | - |
| ACAK30_RS04225 (JUNP406_0839) | hemJ | 887477..887929 (-) | 453 | WP_000339889.1 | protoporphyrinogen oxidase HemJ | - |
| ACAK30_RS04230 (JUNP406_0840) | - | 887948..889177 (-) | 1230 | WP_004748109.1 | beta-ketoacyl-ACP synthase II | - |
| ACAK30_RS04235 (JUNP406_0841) | - | 889474..890799 (+) | 1326 | WP_004748107.1 | EcsC family protein | - |
| ACAK30_RS04240 (JUNP406_0842) | rpsL | 891000..891374 (+) | 375 | WP_000246374.1 | 30S ribosomal protein S12 | - |
| ACAK30_RS04245 (JUNP406_0843) | rpsG | 891534..892004 (+) | 471 | WP_001138055.1 | 30S ribosomal protein S7 | - |
| ACAK30_RS04250 (JUNP406_0844) | fusA | 892184..894322 (+) | 2139 | WP_004748104.1 | elongation factor G | - |
| ACAK30_RS04255 (JUNP406_0845) | tuf | 894417..895607 (+) | 1191 | WP_001029610.1 | elongation factor Tu | - |
| ACAK30_RS04260 (JUNP406_0846) | - | 895811..896692 (+) | 882 | WP_004748103.1 | metal-dependent hydrolase | - |
| ACAK30_RS04265 (JUNP406_0847) | - | 896929..897804 (+) | 876 | WP_000992291.1 | metal-dependent hydrolase | - |
| ACAK30_RS04270 (JUNP406_0848) | rimI | 897914..898369 (+) | 456 | WP_000621543.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| ACAK30_RS04275 (JUNP406_0849) | - | 898414..899229 (-) | 816 | WP_000844343.1 | arginyltransferase | - |
| ACAK30_RS04280 (JUNP406_0850) | aat | 899248..899979 (-) | 732 | WP_000854785.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| ACAK30_RS04285 (JUNP406_0851) | trxB | 900099..901046 (-) | 948 | WP_001276144.1 | thioredoxin-disulfide reductase | - |
| ACAK30_RS04290 (JUNP406_0852) | - | 901316..904348 (+) | 3033 | WP_004748102.1 | DNA translocase FtsK | - |
| ACAK30_RS04295 (JUNP406_0853) | rhtC | 904497..905117 (+) | 621 | WP_004748101.1 | threonine export protein RhtC | - |
| ACAK30_RS04300 (JUNP406_0854) | - | 905173..905712 (-) | 540 | WP_001067701.1 | hypothetical protein | - |
| ACAK30_RS04305 (JUNP406_0855) | - | 905860..906147 (-) | 288 | WP_001218560.1 | PA4642 family protein | - |
| ACAK30_RS04310 (JUNP406_0856) | minE | 906231..906503 (-) | 273 | WP_000896934.1 | cell division topological specificity factor MinE | - |
| ACAK30_RS04315 (JUNP406_0857) | minD | 906506..907318 (-) | 813 | WP_001074362.1 | septum site-determining protein MinD | - |
| ACAK30_RS04320 (JUNP406_0858) | minC | 907389..908111 (-) | 723 | WP_000763678.1 | septum site-determining protein MinC | - |
| ACAK30_RS04325 (JUNP406_0859) | - | 908233..909279 (-) | 1047 | WP_001181640.1 | hypothetical protein | - |
| ACAK30_RS04330 (JUNP406_0860) | - | 909295..910221 (-) | 927 | WP_000100973.1 | acyltransferase | - |
| ACAK30_RS04335 (JUNP406_0861) | - | 910466..911119 (+) | 654 | WP_001202415.1 | OmpA family protein | - |
| ACAK30_RS04340 (JUNP406_0862) | rep | 911313..913352 (+) | 2040 | WP_000093035.1 | DNA helicase Rep | - |
| ACAK30_RS04345 (JUNP406_0863) | dut | 913377..913829 (+) | 453 | WP_000868158.1 | dUTP diphosphatase | - |
| ACAK30_RS04350 (JUNP406_0864) | - | 914029..915447 (+) | 1419 | WP_001102848.1 | phosphomannomutase/phosphoglucomutase | - |
| ACAK30_RS04355 (JUNP406_0865) | argB | 915462..916370 (+) | 909 | WP_001135419.1 | acetylglutamate kinase | - |
| ACAK30_RS04360 (JUNP406_0866) | - | 916491..917273 (+) | 783 | WP_000890282.1 | GNAT family N-acetyltransferase | - |
| ACAK30_RS04365 (JUNP406_0867) | - | 917382..918230 (+) | 849 | WP_000336554.1 | class II glutamine amidotransferase | - |
| ACAK30_RS04370 (JUNP406_0868) | - | 918484..918939 (+) | 456 | WP_000782976.1 | bacteriohemerythrin | - |
| ACAK30_RS04375 (JUNP406_0869) | - | 919092..920159 (+) | 1068 | WP_046693192.1 | membrane protein | - |
| ACAK30_RS04380 (JUNP406_0870) | - | 920159..920482 (+) | 324 | WP_000442590.1 | RnfH family protein | - |
| ACAK30_RS04385 (JUNP406_0871) | - | 920537..920935 (-) | 399 | WP_001170994.1 | outer membrane protein assembly factor BamE | - |
| ACAK30_RS04390 (JUNP406_0872) | fur | 921047..921484 (+) | 438 | WP_001122847.1 | ferric iron uptake transcriptional regulator | - |
| ACAK30_RS04395 (JUNP406_0873) | pilU | 921554..922672 (-) | 1119 | WP_000347040.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACAK30_RS04400 (JUNP406_0874) | pilT | 922700..923737 (-) | 1038 | WP_000355489.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACAK30_RS04405 (JUNP406_0875) | - | 923864..924556 (+) | 693 | WP_004748094.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACAK30_RS04410 (JUNP406_0876) | - | 924758..928354 (-) | 3597 | WP_004748092.1 | SbcC/MukB-like Walker B domain-containing protein | - |
| ACAK30_RS04415 (JUNP406_0877) | - | 928364..929632 (-) | 1269 | WP_004748090.1 | exonuclease SbcCD subunit D | - |
| ACAK30_RS04420 (JUNP406_0878) | - | 929797..930270 (+) | 474 | WP_000974355.1 | OsmC family protein | - |
| ACAK30_RS04425 (JUNP406_0879) | - | 930338..930715 (-) | 378 | WP_001059437.1 | VOC family protein | - |
| ACAK30_RS04430 (JUNP406_0880) | - | 931095..931547 (+) | 453 | WP_000164151.1 | ABZJ_00895 family protein | - |
| ACAK30_RS04435 (JUNP406_0881) | - | 931635..932540 (+) | 906 | WP_046693190.1 | TIGR01777 family oxidoreductase | - |
| ACAK30_RS04440 (JUNP406_0882) | - | 932532..933647 (-) | 1116 | WP_004748085.1 | FAD-binding oxidoreductase | - |
| ACAK30_RS04445 (JUNP406_0883) | hemB | 933673..934686 (-) | 1014 | WP_004748084.1 | porphobilinogen synthase | - |
| ACAK30_RS04450 (JUNP406_0884) | - | 934829..935326 (+) | 498 | WP_002156418.1 | thioesterase family protein | - |
| ACAK30_RS04455 (JUNP406_0885) | - | 935596..936747 (+) | 1152 | WP_004748081.1 | EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit | - |
| ACAK30_RS04460 (JUNP406_0886) | - | 936754..938277 (+) | 1524 | WP_004748079.1 | DHA2 family efflux MFS transporter permease subunit | - |
| ACAK30_RS04465 (JUNP406_0887) | ggt | 938581..940566 (+) | 1986 | WP_004748076.1 | gamma-glutamyltransferase | - |
| ACAK30_RS04475 (JUNP406_0890) | - | 941268..942495 (+) | 1228 | Protein_853 | tyrosine-type recombinase/integrase | - |
| ACAK30_RS04480 (JUNP406_0891) | - | 942643..943410 (+) | 768 | WP_000578618.1 | hypothetical protein | - |
| ACAK30_RS04485 (JUNP406_0892) | - | 943620..943835 (+) | 216 | WP_000153154.1 | hypothetical protein | - |
| ACAK30_RS04490 (JUNP406_0893) | - | 943838..944047 (+) | 210 | WP_001016479.1 | helix-turn-helix domain-containing protein | - |
| ACAK30_RS04495 (JUNP406_0894) | - | 944044..944598 (+) | 555 | WP_001988245.1 | BRO family protein | - |
| ACAK30_RS04500 (JUNP406_0895) | - | 944591..944959 (+) | 369 | WP_001046481.1 | hypothetical protein | - |
| ACAK30_RS04505 (JUNP406_0896) | - | 944969..945274 (+) | 306 | WP_000787149.1 | hypothetical protein | - |
| ACAK30_RS04510 (JUNP406_0897) | - | 945396..945674 (+) | 279 | WP_001064707.1 | hypothetical protein | - |
| ACAK30_RS04515 (JUNP406_0898) | - | 945687..948152 (+) | 2466 | WP_001022397.1 | DUF927 domain-containing protein | - |
| ACAK30_RS04520 | - | 948486..948602 (+) | 117 | WP_001992235.1 | single-stranded DNA-binding protein | - |
| ACAK30_RS04525 (JUNP406_0899) | - | 948825..950267 (+) | 1443 | WP_000003535.1 | hypothetical protein | - |
| ACAK30_RS04530 | ssb | 950249..950350 (+) | 102 | WP_168713084.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 372 a.a. Molecular weight: 41896.10 Da Isoelectric Point: 6.6406
>NTDB_id=110218 ACAK30_RS04395 WP_000347040.1 921554..922672(-) (pilU) [Acinetobacter baumannii strain JUNP406]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLQSIMSEKQRKEFAETRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLQSIMSEKQRKEFAETRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ
Nucleotide
Download Length: 1119 bp
>NTDB_id=110218 ACAK30_RS04395 WP_000347040.1 921554..922672(-) (pilU) [Acinetobacter baumannii strain JUNP406]
ATGGATTTTAATGACTTGCTCAACCTGATGGTTGAAAAAAAATCATCGGATCTTTTTATTACAGATGGCGTTGCGCCCTC
TATGAAGATTAACGGACAAATTGTTCCAATTTCAAAAAATAGTCTTTCTGGGGAAGTGATTGGTCAACTGTTACAGTCCA
TCATGAGTGAAAAACAACGCAAAGAATTTGCAGAAACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCAGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTGCAGTTACCGCCTGTACTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTCGTAGGCGCGACAG
GTACAGGTAAATCTACTTCATTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGCTGCATCATTACTCAGCGTGAGGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACATTACGACAAGCGCCGGATGTCATCTTAATTGGTGAGATTCGTTCTCGTGAAGTCATGGACT
ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCCAACAACGCCAACCAAGCACTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGCCAGCTTTACATGGACTTGTCACTTAACTTAAAGGCAATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCTGATGAGGGTCCTGATCAATTATCAGACGGGAAACAGCATTTAACTTTTGACCGCCAGTAA
ATGGATTTTAATGACTTGCTCAACCTGATGGTTGAAAAAAAATCATCGGATCTTTTTATTACAGATGGCGTTGCGCCCTC
TATGAAGATTAACGGACAAATTGTTCCAATTTCAAAAAATAGTCTTTCTGGGGAAGTGATTGGTCAACTGTTACAGTCCA
TCATGAGTGAAAAACAACGCAAAGAATTTGCAGAAACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCAGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTGCAGTTACCGCCTGTACTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTCGTAGGCGCGACAG
GTACAGGTAAATCTACTTCATTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGCTGCATCATTACTCAGCGTGAGGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACATTACGACAAGCGCCGGATGTCATCTTAATTGGTGAGATTCGTTCTCGTGAAGTCATGGACT
ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCCAACAACGCCAACCAAGCACTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGCCAGCTTTACATGGACTTGTCACTTAACTTAAAGGCAATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCTGATGAGGGTCCTGATCAATTATCAGACGGGAAACAGCATTTAACTTTTGACCGCCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Acinetobacter baylyi ADP1 |
75.926 |
100 |
0.772 |
| pilU | Pseudomonas stutzeri DSM 10701 |
69.022 |
98.925 |
0.683 |
| pilU | Vibrio cholerae strain A1552 |
52.973 |
99.462 |
0.527 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.197 |
93.011 |
0.392 |