Detailed information NTG1101774

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: ACNFKH_RS06910
• Genome accession: NZ_CP182513
• Coordinates: 1346707..1348119 (-)
• Length: 470 a.a.
• NCBI ID: WP_004306523.1
• Uniprot ID: A0AAD2Z278
• Organism: Campylobacter jejuni strain AS-83-79
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1341707..1353119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNFKH_RS06885	-	1342031..1342795 (+)	765	WP_004306514.1	TSUP family transporter	-
ACNFKH_RS06890	ctsF	1342788..1343969 (-)	1182	WP_004306516.1	type II secretion system F family protein	Machinery gene
ACNFKH_RS06895	ctsE	1343966..1345525 (-)	1560	WP_016818338.1	GspE/PulE family protein	Machinery gene
ACNFKH_RS06900	ctsX	1345515..1346102 (-)	588	WP_004306520.1	hypothetical protein	Machinery gene
ACNFKH_RS06905	ctsP	1346106..1346714 (-)	609	WP_004306521.1	ATP-binding protein	Machinery gene
ACNFKH_RS06910	ctsD	1346707..1348119 (-)	1413	WP_004306523.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
ACNFKH_RS06915	ctsR	1348097..1348408 (-)	312	WP_002862131.1	hypothetical protein	Machinery gene
ACNFKH_RS06920	nifJ	1348432..1351992 (-)	3561	WP_004306526.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
ACNFKH_RS06925	-	1352085..1352726 (-)	642	WP_004306528.1	HAD family hydrolase	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 53090.57 Da
• Isoelectric Point: 6.4062

>NTDB_id=1101774 ACNFKH_RS06910 WP_004306523.1 1346707..1348119(-) (ctsD) [Campylobacter jejuni strain AS-83-79]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIEESLDEFAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=1101774 ACNFKH_RS06910 WP_004306523.1 1346707..1348119(-) (ctsD) [Campylobacter jejuni strain AS-83-79]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATAGAAGAAAGTCTTGATGAGTTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAATTCTGTCAATATTCATCAAATGAGTTTGGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATTGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	99.149	100	0.991