Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACNFKH_RS06915 Genome accession   NZ_CP182513
Coordinates   1348097..1348408 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AS-83-79     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1343097..1353408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKH_RS06895 ctsE 1343966..1345525 (-) 1560 WP_016818338.1 GspE/PulE family protein Machinery gene
  ACNFKH_RS06900 ctsX 1345515..1346102 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  ACNFKH_RS06905 ctsP 1346106..1346714 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  ACNFKH_RS06910 ctsD 1346707..1348119 (-) 1413 WP_004306523.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACNFKH_RS06915 ctsR 1348097..1348408 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  ACNFKH_RS06920 nifJ 1348432..1351992 (-) 3561 WP_004306526.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACNFKH_RS06925 - 1352085..1352726 (-) 642 WP_004306528.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=1101775 ACNFKH_RS06915 WP_002862131.1 1348097..1348408(-) (ctsR) [Campylobacter jejuni strain AS-83-79]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1101775 ACNFKH_RS06915 WP_002862131.1 1348097..1348408(-) (ctsR) [Campylobacter jejuni strain AS-83-79]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment