Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   ACNFKH_RS06905 Genome accession   NZ_CP182513
Coordinates   1346106..1346714 (-) Length   202 a.a.
NCBI ID   WP_004306521.1    Uniprot ID   A0A5T1MDP2
Organism   Campylobacter jejuni strain AS-83-79     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1341106..1351714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKH_RS06880 - 1341265..1342027 (+) 763 Protein_1333 TIGR02757 family protein -
  ACNFKH_RS06885 - 1342031..1342795 (+) 765 WP_004306514.1 TSUP family transporter -
  ACNFKH_RS06890 ctsF 1342788..1343969 (-) 1182 WP_004306516.1 type II secretion system F family protein Machinery gene
  ACNFKH_RS06895 ctsE 1343966..1345525 (-) 1560 WP_016818338.1 GspE/PulE family protein Machinery gene
  ACNFKH_RS06900 ctsX 1345515..1346102 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  ACNFKH_RS06905 ctsP 1346106..1346714 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  ACNFKH_RS06910 ctsD 1346707..1348119 (-) 1413 WP_004306523.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACNFKH_RS06915 ctsR 1348097..1348408 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23703.66 Da        Isoelectric Point: 9.8540

>NTDB_id=1101773 ACNFKH_RS06905 WP_004306521.1 1346106..1346714(-) (ctsP) [Campylobacter jejuni strain AS-83-79]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESVRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFELKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEHILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1101773 ACNFKH_RS06905 WP_004306521.1 1346106..1346714(-) (ctsP) [Campylobacter jejuni strain AS-83-79]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGTTAGAAAGTGTCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTGAATTGAAAAATATTAGTCTTT
TAGAGCTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTGCAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGCATATTTTAAAGCTTAGTGCTTTAGAGAATGGTTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1MDP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

98.02

100

0.98

Multiple sequence alignment