Detailed information NTG1101770

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: ACNFKH_RS06890
• Genome accession: NZ_CP182513
• Coordinates: 1342788..1343969 (-)
• Length: 393 a.a.
• NCBI ID: WP_004306516.1
• Uniprot ID: A0A5Y8Y838
• Organism: Campylobacter jejuni strain AS-83-79
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1337788..1348969

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNFKH_RS06860	-	1338335..1338676 (+)	342	WP_002869782.1	hypothetical protein	-
ACNFKH_RS06865	flgM	1338739..1338936 (+)	198	WP_002855791.1	flagellar biosynthesis anti-sigma factor FlgM	-
ACNFKH_RS06870	-	1338978..1339412 (+)	435	WP_002856482.1	flagellar protein FlgN	-
ACNFKH_RS06875	flgK	1339422..1341248 (+)	1827	WP_004306510.1	flagellar hook-associated protein FlgK	-
ACNFKH_RS06880	-	1341265..1342027 (+)	763	Protein_1333	TIGR02757 family protein	-
ACNFKH_RS06885	-	1342031..1342795 (+)	765	WP_004306514.1	TSUP family transporter	-
ACNFKH_RS06890	ctsF	1342788..1343969 (-)	1182	WP_004306516.1	type II secretion system F family protein	Machinery gene
ACNFKH_RS06895	ctsE	1343966..1345525 (-)	1560	WP_016818338.1	GspE/PulE family protein	Machinery gene
ACNFKH_RS06900	ctsX	1345515..1346102 (-)	588	WP_004306520.1	hypothetical protein	Machinery gene
ACNFKH_RS06905	ctsP	1346106..1346714 (-)	609	WP_004306521.1	ATP-binding protein	Machinery gene
ACNFKH_RS06910	ctsD	1346707..1348119 (-)	1413	WP_004306523.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
ACNFKH_RS06915	ctsR	1348097..1348408 (-)	312	WP_002862131.1	hypothetical protein	Machinery gene

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 45788.41 Da
• Isoelectric Point: 9.0938

>NTDB_id=1101770 ACNFKH_RS06890 WP_004306516.1 1342788..1343969(-) (ctsF) [Campylobacter jejuni strain AS-83-79]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINFN

Nucleotide

• Length: 1182 bp

>NTDB_id=1101770 ACNFKH_RS06890 WP_004306516.1 1342788..1343969(-) (ctsF) [Campylobacter jejuni strain AS-83-79]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGCGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGATCAATTTTAACTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (261-382)

• Type II secretion system (T2SS), protein F (T2SSF) (60-179)

3D structure

• AlphaFold DB: A0A5Y8Y838

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	98.469	99.746	0.982