Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACM613_RS03720 Genome accession   NZ_CP182485
Coordinates   790031..790543 (-) Length   170 a.a.
NCBI ID   WP_254856363.1    Uniprot ID   -
Organism   Opacimonas sp. LMIT016     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 785031..795543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM613_RS03695 (ACM613_03695) rng 785233..786699 (-) 1467 WP_254856358.1 ribonuclease G -
  ACM613_RS03700 (ACM613_03700) - 786689..787285 (-) 597 WP_254856359.1 Maf family protein -
  ACM613_RS03705 (ACM613_03705) mreD 787295..787768 (-) 474 WP_254856360.1 rod shape-determining protein MreD -
  ACM613_RS03710 (ACM613_03710) mreC 787765..788622 (-) 858 WP_254856361.1 rod shape-determining protein MreC -
  ACM613_RS03715 (ACM613_03715) - 788681..789724 (-) 1044 WP_254856362.1 rod shape-determining protein -
  ACM613_RS03720 (ACM613_03720) ssb 790031..790543 (-) 513 WP_254856363.1 single-stranded DNA-binding protein Machinery gene
  ACM613_RS03725 (ACM613_03725) - 790558..791907 (-) 1350 WP_254856796.1 MFS transporter -
  ACM613_RS03730 (ACM613_03730) uvrA 792056..794881 (+) 2826 WP_254856364.1 excinuclease ABC subunit UvrA -
  ACM613_RS03735 (ACM613_03735) - 794906..795364 (-) 459 WP_254856365.1 DUF3299 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18475.54 Da        Isoelectric Point: 5.2957

>NTDB_id=1101626 ACM613_RS03720 WP_254856363.1 790031..790543(-) (ssb) [Opacimonas sp. LMIT016]
MASRGINKVIIVGNLGNDPEIRYAQNGNAIANLSVATSETWKDQQGQPQEKTEWHRIVMYRRLAEIAGEYLKKGSKIYIE
GKLQTRKWQDQSGNDRYTTEIVANEMQMLDSRGEGSMGGGNMGGGNMGGGAPRNNPASGNTGGFKPSAAPQKPTPPVSEP
DFDMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1101626 ACM613_RS03720 WP_254856363.1 790031..790543(-) (ssb) [Opacimonas sp. LMIT016]
ATGGCATCAAGAGGCATTAACAAAGTTATCATCGTTGGCAACCTTGGCAACGACCCAGAAATACGCTATGCGCAAAACGG
GAACGCAATCGCCAATTTAAGTGTTGCAACCAGTGAAACCTGGAAAGATCAACAAGGTCAACCTCAAGAAAAAACCGAAT
GGCACCGCATCGTTATGTATCGACGTCTTGCCGAGATTGCCGGTGAGTATCTTAAAAAAGGATCTAAAATTTACATTGAA
GGTAAATTGCAAACCCGCAAATGGCAAGACCAATCCGGCAATGACCGTTACACCACAGAAATTGTTGCCAACGAAATGCA
AATGCTCGACAGCCGTGGCGAAGGCAGCATGGGTGGAGGCAATATGGGCGGAGGCAATATGGGTGGCGGTGCGCCACGGA
ACAATCCAGCGAGTGGCAATACCGGAGGATTCAAGCCATCTGCCGCGCCACAAAAACCAACCCCTCCCGTCAGTGAGCCT
GACTTTGATATGGACGACGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.249

100

0.588
  ssb Vibrio cholerae strain A1552

53.631

100

0.565
  ssb Neisseria meningitidis MC58

50

100

0.506
  ssb Neisseria gonorrhoeae MS11

50

100

0.506

Multiple sequence alignment