Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNI65_RS24545 Genome accession   NZ_CP182288
Coordinates   5381969..5382520 (-) Length   183 a.a.
NCBI ID   WP_416760069.1    Uniprot ID   -
Organism   Roseateles sp. So40a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5376969..5387520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNI65_RS24515 (ACNI65_24515) - 5377120..5377773 (+) 654 WP_416760059.1 hydrolase -
  ACNI65_RS24520 (ACNI65_24520) - 5377829..5378104 (+) 276 WP_416760060.1 XapX domain-containing protein -
  ACNI65_RS24525 (ACNI65_24525) - 5378097..5380019 (+) 1923 WP_416760061.1 amidohydrolase -
  ACNI65_RS24530 (ACNI65_24530) - 5380035..5380487 (+) 453 WP_416760063.1 DoxX family protein -
  ACNI65_RS24535 (ACNI65_24535) - 5380484..5381170 (+) 687 WP_416760065.1 YoaK family protein -
  ACNI65_RS24540 (ACNI65_24540) - 5381224..5381697 (+) 474 WP_416760067.1 RidA family protein -
  ACNI65_RS24545 (ACNI65_24545) ssb 5381969..5382520 (-) 552 WP_416760069.1 single-stranded DNA-binding protein Machinery gene
  ACNI65_RS24550 (ACNI65_24550) - 5382762..5383730 (-) 969 WP_416760070.1 diguanylate cyclase domain-containing protein -
  ACNI65_RS24555 (ACNI65_24555) recQ 5383831..5385699 (+) 1869 WP_416760071.1 DNA helicase RecQ -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19760.80 Da        Isoelectric Point: 5.4293

>NTDB_id=1100998 ACNI65_RS24545 WP_416760069.1 5381969..5382520(-) (ssb) [Roseateles sp. So40a]
MASVNKVIILGNLGRDPELRYTPSGSAVCNVSIATTRNWKSREGGERQEETEWHRVVFYDRLAEIAGEYLKKGRPVYVEG
RLKTRKWQDKEGKDNYTTEIIAEQMQLLGGRDGGDEMGGGGGGGYSRERSQERSGGGGGGSGRDSGDFDAPRAPAPRAAA
PRAPAPAPKPATGFDDMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1100998 ACNI65_RS24545 WP_416760069.1 5381969..5382520(-) (ssb) [Roseateles sp. So40a]
ATGGCCTCGGTCAACAAAGTCATCATCCTCGGCAATCTGGGCCGTGATCCCGAACTGCGCTACACGCCGAGCGGCAGCGC
GGTGTGCAACGTGAGCATTGCCACGACGCGCAACTGGAAGAGCCGCGAGGGCGGCGAGCGTCAGGAAGAGACCGAATGGC
ACCGTGTGGTGTTCTACGACCGCCTGGCGGAGATCGCGGGCGAGTACCTGAAGAAGGGTCGTCCGGTGTATGTCGAGGGC
CGTCTGAAGACGCGCAAGTGGCAGGACAAGGAAGGCAAGGACAACTACACGACCGAGATCATCGCGGAGCAGATGCAGCT
GCTGGGCGGCCGTGACGGCGGCGATGAGATGGGTGGTGGCGGTGGTGGCGGCTACAGCCGTGAGCGCTCGCAGGAGCGCA
GCGGTGGTGGCGGTGGCGGCAGCGGCCGTGACAGCGGCGATTTCGACGCGCCGCGCGCGCCGGCCCCGCGTGCCGCGGCG
CCTCGCGCTCCGGCTCCCGCGCCGAAGCCGGCGACCGGCTTCGATGACATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

47.34

100

0.486
  ssb Neisseria meningitidis MC58

46.809

100

0.481
  ssb Glaesserella parasuis strain SC1401

47.826

100

0.481
  ssb Vibrio cholerae strain A1552

44.041

100

0.464

Multiple sequence alignment