Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACM1PF_RS10070 Genome accession   NZ_CP182236
Coordinates   2150437..2150802 (-) Length   121 a.a.
NCBI ID   WP_416674342.1    Uniprot ID   -
Organism   Egbenema sp. FJBBOT/2019     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2145437..2155802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1PF_RS10045 (ACM1PF_10045) - 2145713..2145985 (+) 273 WP_416674337.1 hypothetical protein -
  ACM1PF_RS10050 (ACM1PF_10050) - 2146003..2146704 (+) 702 WP_416674338.1 MgtC/SapB family protein -
  ACM1PF_RS10055 (ACM1PF_10055) - 2147076..2149100 (+) 2025 WP_416674339.1 hypothetical protein -
  ACM1PF_RS10060 (ACM1PF_10060) - 2149289..2149726 (-) 438 WP_416674340.1 peroxiredoxin -
  ACM1PF_RS10065 (ACM1PF_10065) - 2149879..2150271 (-) 393 WP_416674341.1 hypothetical protein -
  ACM1PF_RS10070 (ACM1PF_10070) pilH 2150437..2150802 (-) 366 WP_416674342.1 response regulator Machinery gene
  ACM1PF_RS10075 (ACM1PF_10075) - 2151198..2151398 (+) 201 WP_416674343.1 chlorophyll a/b-binding protein -
  ACM1PF_RS10080 (ACM1PF_10080) - 2151814..2153289 (-) 1476 WP_416674344.1 aminobutyraldehyde dehydrogenase -
  ACM1PF_RS10085 (ACM1PF_10085) - 2153923..2155260 (+) 1338 WP_416674345.1 TldD/PmbA family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13827.16 Da        Isoelectric Point: 6.9520

>NTDB_id=1100952 ACM1PF_RS10070 WP_416674342.1 2150437..2150802(-) (pilH) [Egbenema sp. FJBBOT/2019]
MSTVLIVDDSQTLRQMLTELLQNSGLKVVEATNGVEAKEKIQAKVPDLVITDLVMPQMNGYELCRWIKNEPATQNVPILI
CSTKSEEFDRYWGMKQGADAYITKPFHPVEMMKTVKQLLRR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1100952 ACM1PF_RS10070 WP_416674342.1 2150437..2150802(-) (pilH) [Egbenema sp. FJBBOT/2019]
ATGAGTACGGTTCTGATTGTGGATGATAGCCAAACCCTGCGGCAGATGCTCACGGAACTGCTACAAAATAGTGGGCTGAA
GGTTGTCGAGGCCACGAATGGCGTAGAAGCCAAAGAAAAAATTCAGGCAAAAGTTCCCGATCTGGTAATTACTGACCTCG
TGATGCCGCAGATGAATGGCTATGAACTGTGTCGCTGGATTAAAAATGAACCTGCGACTCAAAATGTACCGATCCTGATT
TGCTCTACTAAAAGCGAAGAGTTCGATCGCTACTGGGGCATGAAGCAGGGAGCCGATGCTTACATCACAAAGCCATTTCA
TCCGGTGGAGATGATGAAGACGGTGAAACAGTTGTTAAGGCGGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

58.333

99.174

0.579
  micA Streptococcus pneumoniae Cp1015

42.149

100

0.421
  pilG Acinetobacter baumannii strain A118

39.474

94.215

0.372
  vicR Streptococcus mutans UA159

37.19

100

0.372

Multiple sequence alignment