Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLIX2_RS13935 Genome accession   NZ_CP182167
Coordinates   3082347..3082871 (+) Length   174 a.a.
NCBI ID   WP_416628602.1    Uniprot ID   -
Organism   Proteus cibi strain COFI-RLBCAU-III     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3077347..3087871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIX2_RS13930 (ACLIX2_13930) uvrA 3079260..3082094 (-) 2835 WP_036914144.1 excinuclease ABC subunit UvrA -
  ACLIX2_RS13935 (ACLIX2_13935) ssb 3082347..3082871 (+) 525 WP_416628602.1 single-stranded DNA-binding protein Machinery gene
  ACLIX2_RS13940 (ACLIX2_13940) - 3082988..3083155 (-) 168 WP_196727849.1 hypothetical protein -
  ACLIX2_RS13945 (ACLIX2_13945) - 3083143..3083586 (-) 444 WP_416630330.1 mobile mystery protein A -
  ACLIX2_RS13950 (ACLIX2_13950) zur 3083942..3084472 (+) 531 WP_023583071.1 zinc uptake transcriptional repressor Zur -
  ACLIX2_RS13955 (ACLIX2_13955) - 3084507..3084812 (-) 306 WP_023583072.1 type II toxin-antitoxin system RelE family toxin -
  ACLIX2_RS13960 (ACLIX2_13960) - 3084802..3085056 (-) 255 WP_023583073.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  ACLIX2_RS13965 (ACLIX2_13965) lexA 3085217..3085828 (-) 612 WP_023583074.1 transcriptional repressor LexA -
  ACLIX2_RS13970 (ACLIX2_13970) - 3085956..3086327 (-) 372 WP_006536373.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18861.90 Da        Isoelectric Point: 4.9468

>NTDB_id=1100649 ACLIX2_RS13935 WP_416628602.1 3082347..3082871(+) (ssb) [Proteus cibi strain COFI-RLBCAU-III]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDSAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAAPVQ
SNEPPIDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1100649 ACLIX2_RS13935 WP_416628602.1 3082347..3082871(+) (ssb) [Proteus cibi strain COFI-RLBCAU-III]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
CGGTGCAGTTGCCAACCTAACATTGGCAACATCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAATTAGCGGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTCTATATC
GAAGGTCAATTACAAACACGTAAATGGCAAGACCAAAGCGGTCAAGACAGATATAGCACTGAAGTTGTCGTTAATATCGG
TGGCACAATGCAGATGTTAGGCGGCCGTGGTGGTCAAGATAGCGCACCTTCACAAGGCGGCCAAGGCGGTTGGGGTCAAC
CACAGCAGCCACAAGCATCACAACAATTTAGCGGTGGCGCGCAATCTCGCCCTGCACAACAACCAGCAGCACCTGTTCAA
AGCAATGAGCCACCTATCGACTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.138

100

0.782
  ssb Glaesserella parasuis strain SC1401

55.914

100

0.598
  ssb Neisseria meningitidis MC58

48.045

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.494

Multiple sequence alignment