Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLIX2_RS08255 Genome accession   NZ_CP182167
Coordinates   1813908..1814351 (+) Length   147 a.a.
NCBI ID   WP_416630190.1    Uniprot ID   -
Organism   Proteus cibi strain COFI-RLBCAU-III     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1773870..1819181 1813908..1814351 within 0


Gene organization within MGE regions


Location: 1773870..1819181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIX2_RS07975 (ACLIX2_07975) - 1773870..1774262 (-) 393 WP_416630132.1 lysis system i-spanin subunit Rz -
  ACLIX2_RS07980 (ACLIX2_07980) - 1774265..1774423 (-) 159 WP_004244729.1 hypothetical protein -
  ACLIX2_RS07985 (ACLIX2_07985) - 1774405..1774875 (-) 471 WP_416630133.1 lysozyme -
  ACLIX2_RS07990 (ACLIX2_07990) - 1774875..1775144 (-) 270 WP_036905789.1 bacteriophage protein -
  ACLIX2_RS07995 (ACLIX2_07995) - 1775198..1775620 (-) 423 WP_416630136.1 hypothetical protein -
  ACLIX2_RS08000 (ACLIX2_08000) - 1776139..1776849 (+) 711 WP_226892303.1 TOPRIM nucleotidyl transferase/hydrolase domain-containing protein -
  ACLIX2_RS08005 (ACLIX2_08005) - 1777210..1778115 (-) 906 WP_098943231.1 hypothetical protein -
  ACLIX2_RS08010 (ACLIX2_08010) - 1778422..1778880 (-) 459 WP_072062620.1 Hsp20 family protein -
  ACLIX2_RS08015 (ACLIX2_08015) cspA 1779212..1779424 (-) 213 WP_004244726.1 RNA chaperone/antiterminator CspA -
  ACLIX2_RS08020 (ACLIX2_08020) - 1779765..1779947 (-) 183 WP_416630139.1 antiterminator Q family protein -
  ACLIX2_RS08025 (ACLIX2_08025) - 1779973..1780842 (+) 870 Protein_1558 tyrosine-type recombinase/integrase -
  ACLIX2_RS08030 (ACLIX2_08030) - 1780952..1781119 (-) 168 Protein_1559 isocitrate/isopropylmalate family dehydrogenase -
  ACLIX2_RS08035 (ACLIX2_08035) - 1781481..1783310 (+) 1830 WP_416630141.1 acyltransferase family protein -
  ACLIX2_RS08040 (ACLIX2_08040) - 1783378..1784517 (-) 1140 WP_416630143.1 hypothetical protein -
  ACLIX2_RS08045 (ACLIX2_08045) - 1784553..1785593 (-) 1041 WP_416630145.1 hypothetical protein -
  ACLIX2_RS08050 (ACLIX2_08050) - 1785597..1788581 (-) 2985 WP_416630147.1 phage tail tip fiber protein -
  ACLIX2_RS08055 (ACLIX2_08055) - 1788582..1788980 (-) 399 WP_161706129.1 DUF6950 family protein -
  ACLIX2_RS08060 (ACLIX2_08060) - 1789037..1789645 (-) 609 WP_161706128.1 hypothetical protein -
  ACLIX2_RS08065 (ACLIX2_08065) - 1789669..1790250 (-) 582 WP_161706127.1 hypothetical protein -
  ACLIX2_RS08070 (ACLIX2_08070) - 1790247..1790846 (-) 600 WP_416630150.1 hypothetical protein -
  ACLIX2_RS08075 (ACLIX2_08075) - 1790847..1794158 (-) 3312 WP_416630152.1 phage tail tape measure protein -
  ACLIX2_RS08080 (ACLIX2_08080) - 1794417..1794767 (-) 351 WP_036904969.1 phage tail protein -
  ACLIX2_RS08085 (ACLIX2_08085) - 1794767..1795240 (-) 474 WP_416630156.1 phage tail protein -
  ACLIX2_RS08090 (ACLIX2_08090) - 1795252..1795653 (-) 402 WP_175304879.1 HK97-gp10 family putative phage morphogenesis protein -
  ACLIX2_RS08095 (ACLIX2_08095) - 1795653..1796042 (-) 390 WP_109395809.1 hypothetical protein -
  ACLIX2_RS08100 (ACLIX2_08100) - 1796029..1796355 (-) 327 WP_416630159.1 phage head closure protein -
  ACLIX2_RS08105 (ACLIX2_08105) - 1796362..1796664 (-) 303 WP_071425267.1 head-tail connector protein -
  ACLIX2_RS08110 (ACLIX2_08110) - 1796753..1797976 (-) 1224 WP_416630304.1 phage major capsid protein -
  ACLIX2_RS08115 (ACLIX2_08115) - 1797992..1798597 (-) 606 WP_006533922.1 HK97 family phage prohead protease -
  ACLIX2_RS08120 (ACLIX2_08120) - 1798587..1799816 (-) 1230 WP_416630162.1 phage portal protein -
  ACLIX2_RS08125 (ACLIX2_08125) - 1799806..1799967 (-) 162 WP_006533924.1 hypothetical protein -
  ACLIX2_RS08130 (ACLIX2_08130) - 1799964..1801697 (-) 1734 WP_416630164.1 terminase large subunit -
  ACLIX2_RS08135 (ACLIX2_08135) - 1801701..1802171 (-) 471 WP_109409619.1 phage terminase small subunit P27 family -
  ACLIX2_RS08140 (ACLIX2_08140) - 1802385..1802732 (-) 348 WP_416630167.1 HNH endonuclease -
  ACLIX2_RS08145 (ACLIX2_08145) - 1802937..1803074 (-) 138 WP_416630169.1 hypothetical protein -
  ACLIX2_RS08150 (ACLIX2_08150) - 1803272..1803748 (-) 477 WP_416630170.1 lysis protein -
  ACLIX2_RS08155 (ACLIX2_08155) - 1803751..1803909 (-) 159 WP_416630172.1 hypothetical protein -
  ACLIX2_RS08160 (ACLIX2_08160) - 1803891..1804361 (-) 471 WP_416630174.1 lysozyme -
  ACLIX2_RS08165 (ACLIX2_08165) - 1804361..1804630 (-) 270 WP_036904926.1 bacteriophage protein -
  ACLIX2_RS08170 (ACLIX2_08170) - 1805217..1805585 (-) 369 WP_416630176.1 antiterminator Q family protein -
  ACLIX2_RS08175 (ACLIX2_08175) - 1805855..1806133 (+) 279 WP_100160166.1 hypothetical protein -
  ACLIX2_RS08180 (ACLIX2_08180) - 1806288..1806965 (-) 678 WP_416630178.1 hypothetical protein -
  ACLIX2_RS08185 (ACLIX2_08185) - 1807267..1807650 (-) 384 WP_036913343.1 antiterminator Q family protein -
  ACLIX2_RS08190 (ACLIX2_08190) - 1807678..1808703 (-) 1026 WP_416630180.1 DUF968 domain-containing protein -
  ACLIX2_RS08195 (ACLIX2_08195) - 1808700..1808834 (-) 135 Protein_1592 KilA-N domain-containing protein -
  ACLIX2_RS08200 (ACLIX2_08200) - 1808919..1809305 (-) 387 WP_368879837.1 RusA family crossover junction endodeoxyribonuclease -
  ACLIX2_RS08205 (ACLIX2_08205) - 1809378..1810469 (-) 1092 WP_416630182.1 replication protein -
  ACLIX2_RS08210 (ACLIX2_08210) - 1810482..1810661 (-) 180 WP_099659597.1 DUF4222 domain-containing protein -
  ACLIX2_RS08215 (ACLIX2_08215) - 1810651..1810860 (-) 210 WP_098943307.1 hypothetical protein -
  ACLIX2_RS08220 (ACLIX2_08220) - 1810949..1811407 (-) 459 WP_088495915.1 YmfL family putative regulatory protein -
  ACLIX2_RS08225 (ACLIX2_08225) - 1811446..1811640 (-) 195 WP_135022261.1 Cro/CI family transcriptional regulator -
  ACLIX2_RS08230 (ACLIX2_08230) - 1811746..1812393 (+) 648 WP_135022259.1 LexA family protein -
  ACLIX2_RS08235 (ACLIX2_08235) - 1812503..1812706 (+) 204 WP_416630186.1 hypothetical protein -
  ACLIX2_RS08240 (ACLIX2_08240) - 1812763..1812987 (+) 225 WP_100159834.1 hypothetical protein -
  ACLIX2_RS08245 (ACLIX2_08245) - 1812965..1813231 (-) 267 WP_370992538.1 hypothetical protein -
  ACLIX2_RS08250 (ACLIX2_08250) - 1813382..1813915 (+) 534 WP_416630188.1 HD family hydrolase -
  ACLIX2_RS08255 (ACLIX2_08255) ssb 1813908..1814351 (+) 444 WP_416630190.1 single-stranded DNA-binding protein Machinery gene
  ACLIX2_RS08260 (ACLIX2_08260) - 1814445..1814654 (+) 210 WP_109372910.1 hypothetical protein -
  ACLIX2_RS08265 (ACLIX2_08265) - 1814763..1815005 (+) 243 WP_416630306.1 excisionase -
  ACLIX2_RS08270 (ACLIX2_08270) - 1814986..1816113 (+) 1128 WP_416630192.1 site-specific integrase -
  ACLIX2_RS08275 (ACLIX2_08275) - 1816239..1816889 (-) 651 WP_416630194.1 hypothetical protein -
  ACLIX2_RS08280 (ACLIX2_08280) icd 1817160..1818413 (-) 1254 WP_023582546.1 NADP-dependent isocitrate dehydrogenase -
  ACLIX2_RS08285 (ACLIX2_08285) rluE 1818552..1819181 (+) 630 WP_109391615.1 23S rRNA pseudouridine(2457) synthase RluE -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16129.16 Da        Isoelectric Point: 7.2762

>NTDB_id=1100643 ACLIX2_RS08255 WP_416630190.1 1813908..1814351(+) (ssb) [Proteus cibi strain COFI-RLBCAU-III]
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQVYI
EGQLQTREWDDNSVKRYTTEIVVKAGGSMQMLGGTIKSAGSHPAQLSKPPDQPHDNQSPMDFDNIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1100643 ACLIX2_RS08255 WP_416630190.1 1813908..1814351(+) (ssb) [Proteus cibi strain COFI-RLBCAU-III]
ATGGCTAACGGATCAGTAAACAAAGTAATCCTCATTGGCAATTTAGGTCGTGATCCTGAAATTCGTTATCTTCCCTCTGG
TGGTGCTGTTGCTAATTTAGCTGTGGCCACAAGTGAAAAATGGCGAGATAAACAAACGGGTGAAAATCGCGAAAAAACAG
AATGGCATCGTGTCGTTCTGTTTGGAAAACTCGCTGATATCGCCAGTGGCTATTTGTGTAAAGGCTCACAAGTTTATATC
GAGGGGCAATTACAAACCCGCGAATGGGATGATAACAGTGTTAAACGTTATACAACAGAAATTGTTGTAAAAGCTGGCGG
TTCGATGCAGATGCTAGGTGGTACCATTAAATCCGCAGGCTCTCATCCAGCACAGCTATCAAAACCACCAGATCAACCTC
ATGACAATCAATCCCCAATGGATTTTGATAACATTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.932

100

0.673
  ssb Glaesserella parasuis strain SC1401

52.174

93.878

0.49
  ssb Neisseria meningitidis MC58

49.167

81.633

0.401
  ssb Neisseria gonorrhoeae MS11

49.167

81.633

0.401

Multiple sequence alignment