Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACBO77_RS16480 Genome accession   NZ_CP182134
Coordinates   3813209..3814603 (+) Length   464 a.a.
NCBI ID   WP_051634076.1    Uniprot ID   A0AAP4NHR5
Organism   Xanthomonas arboricola pv. pruni strain Xap 9-4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3814839..3838003 3813209..3814603 flank 236


Gene organization within MGE regions


Location: 3813209..3838003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBO77_RS16480 pilR 3813209..3814603 (+) 1395 WP_051634076.1 sigma-54-dependent transcriptional regulator Regulator
  ACBO77_RS16485 pilB 3814839..3816572 (-) 1734 WP_039512338.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACBO77_RS16490 - 3816757..3817161 (-) 405 WP_043088084.1 pilin -
  ACBO77_RS16495 pilC 3817539..3818798 (+) 1260 WP_043088082.1 type II secretion system F family protein Machinery gene
  ACBO77_RS16500 - 3818805..3819668 (+) 864 WP_016849610.1 prepilin peptidase -
  ACBO77_RS16505 coaE 3819682..3820305 (+) 624 WP_043088081.1 dephospho-CoA kinase -
  ACBO77_RS16510 - 3820315..3820560 (+) 246 WP_372160084.1 SymE family type I addiction module toxin -
  ACBO77_RS16515 - 3820666..3822000 (-) 1335 WP_016904089.1 sensor histidine kinase -
  ACBO77_RS16520 - 3821993..3822670 (-) 678 WP_006448355.1 response regulator transcription factor -
  ACBO77_RS16525 - 3822771..3823130 (-) 360 WP_223571086.1 hypothetical protein -
  ACBO77_RS16530 rimK 3823357..3824262 (-) 906 WP_166767257.1 30S ribosomal protein S6--L-glutamate ligase -
  ACBO77_RS16535 glgX 3824753..3826885 (+) 2133 WP_039516331.1 glycogen debranching protein GlgX -
  ACBO77_RS16540 - 3827557..3827949 (-) 393 WP_023904915.1 H-NS family nucleoid-associated regulatory protein -
  ACBO77_RS16545 - 3828038..3828424 (-) 387 WP_026064907.1 hypothetical protein -
  ACBO77_RS16550 - 3829240..3829581 (+) 342 WP_043088080.1 hypothetical protein -
  ACBO77_RS16555 - 3829634..3831235 (-) 1602 WP_039516320.1 MobA/MobL family protein -
  ACBO77_RS16560 - 3831501..3831755 (+) 255 WP_039516317.1 hypothetical protein -
  ACBO77_RS16565 - 3831783..3833216 (-) 1434 WP_043088079.1 hypothetical protein -
  ACBO77_RS16570 - 3833209..3833886 (-) 678 WP_416639822.1 hypothetical protein -
  ACBO77_RS16575 - 3834923..3835552 (+) 630 WP_039516323.1 hypothetical protein -
  ACBO77_RS16580 - 3835552..3836148 (+) 597 WP_080640147.1 hypothetical protein -
  ACBO77_RS16585 - 3836896..3837243 (+) 348 Protein_3242 integrase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50118.51 Da        Isoelectric Point: 6.5112

>NTDB_id=1100524 ACBO77_RS16480 WP_051634076.1 3813209..3814603(+) (pilR) [Xanthomonas arboricola pv. pruni strain Xap 9-4]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSGAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1100524 ACBO77_RS16480 WP_051634076.1 3813209..3814603(+) (pilR) [Xanthomonas arboricola pv. pruni strain Xap 9-4]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCCGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCGGCGCGATGGAAGGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGTCCATTTGTGCCGGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGTTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
TTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAAAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCGCATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAATATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACACCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCAGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.261

99.138

0.627
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment