Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMDCT_RS13930 Genome accession   NZ_CP182108
Coordinates   3002863..3003363 (+) Length   166 a.a.
NCBI ID   WP_416633576.1    Uniprot ID   -
Organism   Salicola sp. KBTZ08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2997863..3008363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMDCT_RS13915 (ACMDCT_13915) rplQ 2997993..2998394 (+) 402 WP_416633573.1 50S ribosomal protein L17 -
  ACMDCT_RS13920 (ACMDCT_13920) uvrA 2998463..3001297 (-) 2835 WP_416633574.1 excinuclease ABC subunit UvrA -
  ACMDCT_RS13925 (ACMDCT_13925) - 3001431..3002792 (+) 1362 WP_416633575.1 MFS transporter -
  ACMDCT_RS13930 (ACMDCT_13930) ssb 3002863..3003363 (+) 501 WP_416633576.1 single-stranded DNA-binding protein Machinery gene
  ACMDCT_RS13935 (ACMDCT_13935) - 3003520..3004422 (+) 903 WP_416633577.1 hypothetical protein -
  ACMDCT_RS13940 (ACMDCT_13940) - 3004419..3005030 (+) 612 WP_416633578.1 PilN domain-containing protein -
  ACMDCT_RS13945 (ACMDCT_13945) - 3005027..3005704 (+) 678 WP_416633579.1 hypothetical protein -
  ACMDCT_RS13950 (ACMDCT_13950) - 3005724..3006038 (+) 315 WP_416633580.1 hypothetical protein -
  ACMDCT_RS13955 (ACMDCT_13955) mshL 3006052..3007737 (+) 1686 WP_416633581.1 pilus (MSHA type) biogenesis protein MshL -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17893.81 Da        Isoelectric Point: 4.6018

>NTDB_id=1100398 ACMDCT_RS13930 WP_416633576.1 3002863..3003363(+) (ssb) [Salicola sp. KBTZ08]
MARGVNKVILIGNLGADPETRYTANGNPVTNLRLATDESYKDRNTGQMVPKTEWHRIVMFGKIAEIAGQYLRKGSKVYIE
GKLQTNKWQDQNGQDRYTTEIIVDINGQMQMLDSRSGDNAGMGGGAPAAAQGNAPQGGGYAPQGGDQSQGTGMPDPVDDF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1100398 ACMDCT_RS13930 WP_416633576.1 3002863..3003363(+) (ssb) [Salicola sp. KBTZ08]
ATGGCGAGAGGCGTAAACAAGGTCATTCTGATCGGCAACCTGGGAGCGGACCCTGAAACGCGGTATACCGCCAACGGTAA
CCCGGTAACCAACCTCCGGCTGGCGACGGACGAGAGCTACAAGGACCGCAACACTGGGCAGATGGTGCCAAAAACGGAAT
GGCACCGGATCGTCATGTTCGGCAAGATTGCGGAGATTGCGGGCCAGTACCTGCGCAAGGGGTCCAAGGTCTACATTGAA
GGCAAGCTCCAGACCAACAAATGGCAGGATCAGAACGGTCAGGACCGCTATACCACCGAGATCATTGTCGACATCAACGG
CCAGATGCAGATGCTGGACAGCCGTAGTGGCGACAATGCCGGCATGGGCGGTGGCGCCCCGGCTGCTGCCCAGGGAAACG
CGCCCCAGGGGGGCGGTTATGCGCCCCAGGGAGGCGACCAGAGTCAGGGCACTGGCATGCCCGATCCGGTTGATGACTTT
GATGACGATATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.396

100

0.596
  ssb Vibrio cholerae strain A1552

51.913

100

0.572
  ssb Neisseria gonorrhoeae MS11

43.75

100

0.464
  ssb Neisseria meningitidis MC58

41.667

100

0.452

Multiple sequence alignment