Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABXS88_RS10495 Genome accession   NZ_AP031572
Coordinates   2288866..2289663 (+) Length   265 a.a.
NCBI ID   WP_353671996.1    Uniprot ID   -
Organism   Synechocystis sp. LKSZ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2283866..2294663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS88_RS10470 (OLK001_20560) - 2284844..2285518 (+) 675 WP_353671992.1 energy-coupling factor ABC transporter ATP-binding protein -
  ABXS88_RS10475 (OLK001_20570) rsmG 2285509..2286255 (+) 747 WP_353671993.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ABXS88_RS10480 (OLK001_20580) - 2286262..2286672 (+) 411 Protein_2059 MAPEG family protein -
  ABXS88_RS10485 (OLK001_20590) pilM 2286819..2287922 (+) 1104 WP_353671994.1 type IV pilus biogenesis protein PilM Machinery gene
  ABXS88_RS10490 (OLK001_20600) pilN 2287977..2288840 (+) 864 WP_353671995.1 PilN domain-containing protein Machinery gene
  ABXS88_RS10495 (OLK001_20610) pilO 2288866..2289663 (+) 798 WP_353671996.1 pilus assembly protein Machinery gene
  ABXS88_RS10500 (OLK001_20620) pilQ 2289745..2291946 (+) 2202 WP_353671997.1 secretin N-terminal domain-containing protein Machinery gene
  ABXS88_RS10505 (OLK001_20630) - 2291953..2292279 (+) 327 WP_353671998.1 hypothetical protein -
  ABXS88_RS10510 (OLK001_20640) - 2292264..2292503 (+) 240 WP_353671999.1 hypothetical protein -
  ABXS88_RS10515 (OLK001_20650) - 2292514..2293290 (+) 777 WP_353672000.1 pentapeptide repeat-containing protein -
  ABXS88_RS10520 (OLK001_20660) - 2293375..2294418 (+) 1044 WP_353672001.1 glucokinase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29155.28 Da        Isoelectric Point: 4.8190

>NTDB_id=110030 ABXS88_RS10495 WP_353671996.1 2288866..2289663(+) (pilO) [Synechocystis sp. LKSZ1]
MTYTQDYSTTTIIDDFGSESNYPTAFGITFTPKVSGIGLGLLGLFGAGYVLVTFFMPALGKYLELKLDETTKQEQVNQQT
QSTLQQKLQEAEGRLQQAEKRRATVLDLYANSNDLKTLLLDVNTLIQSRDLTFLNFLPQGDPVIIGDDSLGAGAKNKLKR
QTYQLTIKGPFGNTHNFLRDLERLQPLILIKDLKTDLVQTEIPVNLVQSGNRAELKPQINDTLNTSMTLDVLLPLTPEEI
AALAPPPPPPGGAGQAQKPEETPKK

Nucleotide


Download         Length: 798 bp        

>NTDB_id=110030 ABXS88_RS10495 WP_353671996.1 2288866..2289663(+) (pilO) [Synechocystis sp. LKSZ1]
ATGACCTACACCCAAGACTACTCAACGACCACGATCATTGATGATTTTGGCTCCGAGTCCAACTATCCGACGGCCTTTGG
CATTACCTTTACCCCCAAAGTGAGCGGTATTGGCCTAGGCCTACTGGGCCTTTTCGGAGCCGGCTATGTTCTCGTCACTT
TCTTCATGCCTGCGTTAGGCAAATATTTAGAACTCAAACTAGATGAGACAACTAAGCAAGAACAAGTTAACCAACAAACC
CAAAGTACACTCCAGCAGAAACTCCAGGAAGCAGAGGGCCGTCTTCAGCAGGCAGAAAAACGCCGAGCAACAGTATTAGA
CCTCTATGCCAACAGTAACGACCTCAAAACTCTATTGCTGGATGTTAATACCCTGATCCAATCCCGTGATCTGACTTTTC
TCAATTTTCTGCCCCAGGGGGATCCCGTTATTATTGGGGATGATTCTCTAGGAGCCGGGGCCAAAAATAAACTGAAGCGT
CAAACCTATCAGTTGACCATCAAGGGCCCCTTTGGTAATACCCACAATTTCCTTCGCGATCTAGAGCGGCTCCAACCCCT
GATTTTGATCAAAGACCTGAAGACTGATTTGGTGCAAACGGAGATTCCCGTCAACCTAGTCCAGAGTGGCAATCGGGCCG
AGCTTAAGCCGCAAATTAATGATACCCTGAACACCAGCATGACCCTGGATGTCCTGTTACCCTTAACACCAGAGGAAATT
GCTGCCTTAGCGCCACCGCCGCCGCCCCCTGGGGGAGCTGGCCAGGCCCAAAAGCCGGAGGAGACGCCGAAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Synechocystis sp. PCC 6803

57.377

92.075

0.528

Multiple sequence alignment