Detailed information NTG1099870

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACNANZ_RS05245
• Genome accession: NZ_CP181370
• Coordinates: 1107757..1108632 (-)
• Length: 291 a.a.
• NCBI ID: WP_201397468.1
• Uniprot ID: -
• Organism: Alicycliphilus denitrificans strain A12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1102757..1113632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNANZ_RS05215 (ACNANZ_05215)	argJ	1103447..1104676 (+)	1230	WP_416401652.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
ACNANZ_RS05220 (ACNANZ_05220)	-	1104721..1105593 (+)	873	WP_094434735.1	ATP-binding protein	-
ACNANZ_RS05225 (ACNANZ_05225)	-	1105590..1106015 (+)	426	WP_416401653.1	NUDIX domain-containing protein	-
ACNANZ_RS05230 (ACNANZ_05230)	-	1106078..1106284 (-)	207	WP_416401654.1	DNA gyrase inhibitor YacG	-
ACNANZ_RS05235 (ACNANZ_05235)	zapD	1106286..1107041 (-)	756	WP_416401655.1	cell division protein ZapD	-
ACNANZ_RS05240 (ACNANZ_05240)	coaE	1107119..1107754 (-)	636	WP_416401656.1	dephospho-CoA kinase	-
ACNANZ_RS05245 (ACNANZ_05245)	pilD	1107757..1108632 (-)	876	WP_201397468.1	prepilin peptidase	Machinery gene
ACNANZ_RS05250 (ACNANZ_05250)	pilC	1108632..1109849 (-)	1218	WP_416401657.1	type II secretion system F family protein	Machinery gene
ACNANZ_RS05255 (ACNANZ_05255)	pilB	1109871..1111610 (-)	1740	WP_094434747.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACNANZ_RS05260 (ACNANZ_05260)	-	1112450..1113454 (+)	1005	WP_416401658.1	hypothetical protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31199.82 Da
• Isoelectric Point: 8.0793

>NTDB_id=1099870 ACNANZ_RS05245 WP_201397468.1 1107757..1108632(-) (pilD) [Alicycliphilus denitrificans strain A12]
MTGSAFADAVLVGVLGLLIGSFLNVVIHRLPRMMERQWAAECAQYAQDAGLPAQGGAAPAEPFNLLTPRSRCPSCGHEVR
WYENIPVLSYLALRGRCSGCGTRIGVRYPLVELATAALFHACALRWGWSFTTLAWCGFCAALVALALIDWDTTLLPDDIT
LPLLWAGLLASVLRWIDVQPVDAVIGAAAGYVSLWLVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIVLMASVI
GALVGIAMKFASSLREGKYVPFGPFLAGGGLAAMLWGPARIMRAIFSTLGL

Nucleotide

• Length: 876 bp

>NTDB_id=1099870 ACNANZ_RS05245 WP_201397468.1 1107757..1108632(-) (pilD) [Alicycliphilus denitrificans strain A12]
ATGACGGGTTCCGCCTTTGCGGATGCCGTGCTCGTCGGCGTCCTGGGCCTGCTGATCGGCAGCTTTCTGAACGTGGTGAT
CCACCGCCTGCCGCGCATGATGGAGCGGCAGTGGGCCGCGGAATGCGCGCAGTACGCCCAGGATGCGGGCCTGCCGGCAC
AGGGCGGCGCCGCGCCGGCCGAGCCCTTCAACCTGCTGACGCCACGCTCGCGCTGCCCTTCCTGCGGGCACGAGGTGCGC
TGGTACGAGAACATCCCCGTGCTCAGCTACCTCGCCCTGCGCGGCCGCTGCTCGGGCTGCGGCACGCGCATCGGCGTGCG
CTACCCGCTGGTCGAGCTGGCCACCGCCGCCCTGTTCCATGCCTGCGCCCTGCGCTGGGGCTGGTCTTTCACGACGCTGG
CCTGGTGCGGCTTTTGCGCGGCCCTGGTGGCGCTGGCCCTGATCGACTGGGACACGACCCTGCTGCCCGACGACATCACC
CTGCCCCTGCTATGGGCCGGGCTGCTGGCCTCCGTGCTGCGCTGGATAGACGTGCAGCCGGTGGACGCGGTGATCGGCGC
GGCCGCGGGCTACGTATCGCTGTGGCTCGTCTACTGGGGCTTCAAGCTCGCCACGGGCAAGGAGGGCATGGGCTATGGCG
ACTTCAAGCTGTTCGCGGCCCTGGGCGCGTGGTTCGGCTGGCAGGCTCTGGTGCCCATCGTCCTCATGGCGTCGGTCATC
GGCGCCCTCGTCGGCATCGCCATGAAGTTCGCCAGCAGCCTGCGCGAGGGCAAGTACGTGCCCTTCGGCCCGTTCCTGGC
GGGAGGCGGGCTGGCCGCCATGCTGTGGGGGCCGGCGCGCATCATGCGGGCCATCTTCTCCACCCTGGGGCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50	97.595	0.488
pilD	Vibrio campbellii strain DS40M4	46.263	96.564	0.447
pilD	Neisseria gonorrhoeae MS11	47.126	89.691	0.423
pilD	Acinetobacter nosocomialis M2	43.382	93.471	0.405
pilD	Acinetobacter baumannii D1279779	43.382	93.471	0.405