Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLNGM_RS15820 Genome accession   NZ_CP181348
Coordinates   3312245..3312787 (+) Length   180 a.a.
NCBI ID   WP_090959229.1    Uniprot ID   A0A7W6FTV2
Organism   Aureimonas phyllosphaerae strain Leaf1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3307245..3317787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLNGM_RS15810 (ACLNGM_15810) - 3307576..3309048 (+) 1473 WP_416355678.1 NAD(P)H-hydrate dehydratase -
  ACLNGM_RS15815 (ACLNGM_15815) uvrA 3309051..3311927 (-) 2877 WP_416358464.1 excinuclease ABC subunit UvrA -
  ACLNGM_RS15820 (ACLNGM_15820) ssb 3312245..3312787 (+) 543 WP_090959229.1 single-stranded DNA-binding protein Machinery gene
  ACLNGM_RS15825 (ACLNGM_15825) - 3312803..3313435 (-) 633 WP_416355679.1 MarC family protein -
  ACLNGM_RS15830 (ACLNGM_15830) gyrA 3313725..3316409 (+) 2685 WP_416358465.1 DNA gyrase subunit A -
  ACLNGM_RS15835 (ACLNGM_15835) - 3316468..3316596 (-) 129 WP_280137607.1 hypothetical protein -
  ACLNGM_RS15840 (ACLNGM_15840) coaD 3316791..3317288 (+) 498 WP_416355680.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18772.48 Da        Isoelectric Point: 5.9820

>NTDB_id=1099852 ACLNGM_RS15820 WP_090959229.1 3312245..3312787(+) (ssb) [Aureimonas phyllosphaerae strain Leaf1]
MAGSVNKVILVGNLGADPEIKRLNSGDAIANLRIATSETWRDKASGERKERTEWHSVVIFNENLVKVAEQYLKKGSTVYI
EGQLQTRSWEDQQGQKRYTTEVVLQRFRGELQMLGGRGGDGGGPSYDGGGERSGGRSGGGGDYGRGGGGAGGRSSGGGGG
YGGGGGGGRPSDDMDDEIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1099852 ACLNGM_RS15820 WP_090959229.1 3312245..3312787(+) (ssb) [Aureimonas phyllosphaerae strain Leaf1]
ATGGCGGGTAGCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCCGAGATCAAGCGCCTCAATTCCGGCGA
TGCGATCGCGAACCTGCGGATCGCGACCTCCGAGACCTGGCGCGACAAAGCTTCCGGCGAGCGCAAGGAGCGCACGGAGT
GGCATAGCGTCGTGATTTTCAACGAGAACCTGGTGAAGGTCGCCGAGCAATACCTGAAGAAGGGCTCGACGGTCTACATC
GAGGGCCAGCTGCAGACGCGCTCCTGGGAAGATCAGCAGGGCCAGAAGCGGTACACGACTGAAGTCGTGTTGCAGCGGTT
CCGCGGCGAACTGCAGATGCTCGGCGGACGCGGTGGCGACGGCGGCGGCCCGTCCTATGACGGCGGCGGCGAGCGCTCGG
GCGGACGCTCCGGCGGGGGCGGTGACTACGGCCGTGGCGGCGGTGGCGCCGGGGGCCGCAGTTCGGGCGGCGGCGGTGGA
TATGGCGGCGGGGGCGGCGGCGGTCGTCCGTCCGACGACATGGATGACGAGATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W6FTV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.136

97.778

0.5
  ssb Glaesserella parasuis strain SC1401

45.989

100

0.478
  ssb Neisseria gonorrhoeae MS11

36.17

100

0.378
  ssb Neisseria meningitidis MC58

35.638

100

0.372

Multiple sequence alignment