Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ABXS94_RS00670 Genome accession   NZ_AP031566
Coordinates   155771..156994 (-) Length   407 a.a.
NCBI ID   WP_353675378.1    Uniprot ID   -
Organism   Acinetobacter towneri strain PT23-B2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 150771..161994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS00645 (PT23B2_01230) - 150896..151486 (-) 591 WP_136144381.1 hypothetical protein -
  ABXS94_RS00650 (PT23B2_01240) - 151811..152356 (-) 546 WP_004970127.1 glutathione peroxidase -
  ABXS94_RS00655 (PT23B2_01250) - 152642..153550 (+) 909 WP_096902732.1 DMT family transporter -
  ABXS94_RS00660 (PT23B2_01270) - 154060..155139 (+) 1080 WP_353675377.1 transposase -
  ABXS94_RS00665 (PT23B2_01280) - 155153..155722 (-) 570 WP_004970120.1 Sua5/YciO/YrdC/YwlC family protein -
  ABXS94_RS00670 (PT23B2_01290) dprA 155771..156994 (-) 1224 WP_353675378.1 DNA-processing protein DprA Machinery gene
  ABXS94_RS00675 (PT23B2_01300) tsaP 157015..158172 (-) 1158 WP_353675379.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABXS94_RS00680 (PT23B2_01310) def 158294..158824 (+) 531 WP_004970115.1 peptide deformylase -
  ABXS94_RS00685 (PT23B2_01320) - 158932..159360 (+) 429 WP_353675380.1 DUF2946 family protein -
  ABXS94_RS00690 (PT23B2_01330) - 159424..161496 (+) 2073 WP_353675381.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 407 a.a.        Molecular weight: 45230.16 Da        Isoelectric Point: 6.5806

>NTDB_id=109983 ABXS94_RS00670 WP_353675378.1 155771..156994(-) (dprA) [Acinetobacter towneri strain PT23-B2]
MLNSFTPHQINYIKLWYLVQHSLSSFYKLEQYFGSVAAAVQPEHLLAWSEVRVHANHQQRAKEYLSQSGQQAFENVLKQL
QQHCDFILTLDDPNYPNQLRPYANKAPILFGQGNAQALLQAQIAIVGSRKASPHGRQVAYDFAYYLSEQGFFINSGLAQG
IDEAAHQGALAHHRTIAVMGTGLDSTYPSAHHALRQQIVERGGAVITEFLPHTKPLQQNFPRRNRLVSGLSLGVIVAEAS
LNSGSLITAKCAAEQGKLIFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVIEDLALPTQWQYQQNQIATNPDQVTAVST
ETESPTPPTEATFLSTTTKTADTSTPHIPEHLLALYQQLDWVGQSIDHLAQQLNLDIATLTSALMELELMGFCLQQSGLY
LRCRPLK

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=109983 ABXS94_RS00670 WP_353675378.1 155771..156994(-) (dprA) [Acinetobacter towneri strain PT23-B2]
ATGTTGAATTCATTCACCCCACATCAAATCAACTACATTAAGTTGTGGTATTTGGTTCAGCATTCACTGTCGAGTTTTTA
TAAACTAGAACAATATTTTGGTTCCGTGGCTGCCGCAGTGCAGCCCGAACATCTTTTGGCTTGGTCAGAAGTACGTGTAC
ATGCCAACCATCAACAGCGTGCTAAAGAATATCTTAGCCAGTCAGGGCAACAGGCCTTTGAAAACGTCTTAAAACAATTA
CAACAGCATTGTGATTTTATCCTGACCTTGGATGATCCCAACTATCCTAACCAACTACGCCCCTATGCAAACAAAGCCCC
AATTTTATTTGGCCAAGGCAATGCTCAGGCTTTACTACAAGCCCAAATTGCAATTGTTGGCAGTCGCAAAGCCAGCCCAC
ACGGACGGCAAGTGGCTTATGATTTTGCCTATTATTTAAGTGAGCAAGGTTTCTTTATCAATAGCGGTTTGGCACAAGGT
ATTGATGAAGCTGCACATCAAGGTGCTTTGGCACACCATCGTACCATTGCAGTCATGGGTACAGGTTTAGACAGCACCTA
CCCGAGTGCCCACCATGCACTCCGCCAGCAGATTGTGGAACGTGGTGGTGCAGTGATTACAGAATTTTTACCCCACACCA
AACCTTTGCAGCAAAATTTTCCACGACGTAATCGGTTGGTGAGTGGATTGAGTTTAGGCGTTATTGTTGCTGAAGCCAGT
TTAAATAGTGGTTCCCTGATTACCGCTAAATGCGCAGCCGAACAAGGTAAATTAATTTTTGCTATTCCTGGACATATTTA
CAGTGAATTTCATCAGGGTTGCCATCAATTAATTCGTGAAGGTGCAATTTTGGTCGATCATCCTGAACAAGTGATTGAGG
ATTTAGCCCTGCCAACCCAATGGCAATATCAACAAAACCAAATTGCGACAAACCCAGATCAGGTCACAGCAGTATCGACA
GAAACAGAATCTCCTACACCACCAACAGAAGCAACGTTTCTAAGCACCACTACAAAAACAGCAGATACAAGTACACCGCA
TATTCCCGAGCATTTATTGGCACTGTATCAACAACTGGATTGGGTCGGACAAAGCATCGATCACTTGGCACAGCAACTGA
ATTTAGATATTGCCACACTCACCAGCGCATTAATGGAACTGGAACTCATGGGCTTCTGTTTACAACAATCAGGTTTATAT
CTGCGTTGTCGTCCACTCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

61.139

99.263

0.607

  dprA Acinetobacter baumannii D1279779

61.139

99.263

0.607

  dprA Acinetobacter baylyi ADP1

59.158

99.263

0.587


Multiple sequence alignment