Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABXS94_RS00675 Genome accession   NZ_AP031566
Coordinates   157015..158172 (-) Length   385 a.a.
NCBI ID   WP_353675379.1    Uniprot ID   -
Organism   Acinetobacter towneri strain PT23-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152015..163172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS00655 (PT23B2_01250) - 152642..153550 (+) 909 WP_096902732.1 DMT family transporter -
  ABXS94_RS00660 (PT23B2_01270) - 154060..155139 (+) 1080 WP_353675377.1 transposase -
  ABXS94_RS00665 (PT23B2_01280) - 155153..155722 (-) 570 WP_004970120.1 Sua5/YciO/YrdC/YwlC family protein -
  ABXS94_RS00670 (PT23B2_01290) dprA 155771..156994 (-) 1224 WP_353675378.1 DNA-processing protein DprA Machinery gene
  ABXS94_RS00675 (PT23B2_01300) tsaP 157015..158172 (-) 1158 WP_353675379.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABXS94_RS00680 (PT23B2_01310) def 158294..158824 (+) 531 WP_004970115.1 peptide deformylase -
  ABXS94_RS00685 (PT23B2_01320) - 158932..159360 (+) 429 WP_353675380.1 DUF2946 family protein -
  ABXS94_RS00690 (PT23B2_01330) - 159424..161496 (+) 2073 WP_353675381.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42146.38 Da        Isoelectric Point: 8.8557

>NTDB_id=109984 ABXS94_RS00675 WP_353675379.1 157015..158172(-) (tsaP) [Acinetobacter towneri strain PT23-B2]
MKKVLTDTSSFRVLGFKKQVLALAVCLIVGLGAISVAEAAPARNINPPALKASAPNVYVVKKGDTLWDISKKFLNNPLRW
PEIWASNRHVKNPHWIFPGDRLLMCTYEGRPIIGKDEGDGCEGIIRRYAGKSTNLQPQIRVESLNNTIPVIPLDYIKHWL
ERSSIIAADALQGTPYILGTSDQRVLAAKGQSVYARGAGLEVGQRYGVYREGEPYMLTDANGQKFNAGIELTQVAAGIAV
RGENDITTLELTDTYNAEVRRGDRVLPIYDPMLPTLFYPTHAENVSTGGQVLRVMGSIGTAAKHSVVAIDRGTLHGVQSG
HVFSVAQKGEVVTDPKTKERVQLPGERIGNIMVFKSFDHISYAYVLDSELPIKVGANLQTPLMDD

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=109984 ABXS94_RS00675 WP_353675379.1 157015..158172(-) (tsaP) [Acinetobacter towneri strain PT23-B2]
ATGAAAAAGGTTTTGACAGACACATCCTCTTTTCGTGTCTTGGGGTTTAAAAAGCAAGTTTTAGCACTCGCGGTATGTCT
CATAGTGGGACTTGGTGCGATCAGTGTGGCTGAAGCAGCACCTGCACGAAACATCAATCCGCCTGCCTTAAAAGCCAGCG
CACCAAATGTGTATGTGGTAAAAAAAGGCGATACCTTATGGGATATTTCCAAAAAATTCCTGAACAACCCATTACGTTGG
CCTGAAATTTGGGCAAGTAACCGTCACGTAAAAAATCCACACTGGATTTTCCCAGGTGACCGTTTGTTGATGTGTACCTA
CGAAGGTCGCCCTATTATTGGTAAAGATGAAGGCGATGGCTGTGAAGGCATTATTCGTCGTTATGCAGGCAAGAGCACCA
ATTTACAGCCGCAAATTCGCGTGGAGTCTTTAAATAATACCATTCCTGTAATTCCACTTGACTACATCAAACACTGGTTA
GAGCGCAGCAGCATTATTGCCGCAGATGCGTTACAAGGCACACCATATATTTTAGGTACTTCTGATCAACGTGTTTTAGC
TGCTAAAGGTCAAAGTGTGTATGCACGTGGTGCAGGTCTGGAAGTAGGTCAACGCTACGGTGTATATCGTGAAGGCGAAC
CGTACATGCTGACCGATGCCAATGGTCAAAAATTCAATGCAGGCATTGAACTCACTCAAGTTGCTGCAGGTATTGCAGTA
CGTGGTGAAAATGACATCACCACACTTGAATTGACCGATACCTACAATGCCGAAGTGCGTCGTGGTGATCGCGTCTTACC
AATTTATGACCCAATGCTGCCAACCTTGTTCTACCCAACGCATGCTGAAAATGTCAGCACAGGTGGTCAAGTGCTACGTG
TGATGGGTTCGATTGGTACTGCAGCAAAACACAGTGTTGTGGCAATTGATCGCGGTACATTACATGGCGTGCAATCTGGT
CATGTGTTTAGCGTAGCGCAAAAAGGCGAAGTGGTCACCGACCCGAAAACCAAAGAACGTGTTCAGCTTCCAGGCGAACG
TATTGGCAATATCATGGTCTTCAAGAGCTTTGACCACATTAGCTATGCCTATGTATTAGACAGCGAATTGCCAATTAAAG
TGGGTGCGAACTTACAAACACCCCTAATGGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

64.675

100

0.647

Multiple sequence alignment