Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H9T68_RS23890 Genome accession   NZ_CP181346
Coordinates   5270271..5270816 (+) Length   181 a.a.
NCBI ID   WP_280190080.1    Uniprot ID   -
Organism   Delftia sp. PS-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5265271..5275816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9T68_RS23880 (H9T68_023875) glnE 5265686..5268427 (+) 2742 WP_280190079.1 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase -
  H9T68_RS23885 (H9T68_023880) - 5268943..5270118 (+) 1176 WP_280190113.1 MFS transporter -
  H9T68_RS23890 (H9T68_023885) ssb 5270271..5270816 (+) 546 WP_280190080.1 single-stranded DNA-binding protein Machinery gene
  H9T68_RS23895 (H9T68_023890) - 5270923..5274138 (-) 3216 WP_280190081.1 type I restriction endonuclease subunit R -
  H9T68_RS23900 (H9T68_023895) - 5274135..5274416 (-) 282 WP_280190082.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19522.57 Da        Isoelectric Point: 5.9603

>NTDB_id=1099821 H9T68_RS23890 WP_280190080.1 5270271..5270816(+) (ssb) [Delftia sp. PS-11]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGGGGGQQGGYGDEGYGDSGGYEAAPRRAAPAPAPRQAAPAPRPAPAP
MAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1099821 H9T68_RS23890 WP_280190080.1 5270271..5270816(+) (ssb) [Delftia sp. PS-11]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTGGGTCGCGACCCTGAAATGCGCACCTTCCCCAGCGGCGACCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAATGGGCGCCTGGCCGAGATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCTCGGGCCAGGAGCGCTACGCCACGGAAATCCGCGCCGACACCATGCA
GATGCTGGGCAGCCGCCAGGGCGGCGGCGGTGGCCAGCAGGGCGGCTATGGCGACGAAGGCTACGGCGACAGCGGCGGCT
ACGAGGCCGCTCCCCGCCGCGCCGCGCCGGCACCGGCTCCGCGCCAGGCAGCCCCTGCACCGCGCCCCGCGCCCGCGCCC
ATGGCACCGCCGCCCCAGCGCGCGGCCTCGGGCTTCGACGACATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.439

100

0.558
  ssb Glaesserella parasuis strain SC1401

52.406

100

0.541
  ssb Neisseria gonorrhoeae MS11

45.81

98.895

0.453
  ssb Neisseria meningitidis MC58

43.784

100

0.448

Multiple sequence alignment