Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLM20_RS00375 Genome accession   NZ_CP181340
Coordinates   78992..79522 (+) Length   176 a.a.
NCBI ID   WP_416368456.1    Uniprot ID   -
Organism   Tritonibacter mobilis strain YJ3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 73992..84522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLM20_RS00355 (ACLM20_00355) - 74782..76197 (-) 1416 WP_416368453.1 tetratricopeptide repeat-containing sulfotransferase family protein -
  ACLM20_RS00360 (ACLM20_00360) - 76326..77462 (-) 1137 WP_416368454.1 cytochrome-c peroxidase -
  ACLM20_RS00365 (ACLM20_00365) - 77594..77968 (-) 375 WP_416368455.1 hypothetical protein -
  ACLM20_RS00370 (ACLM20_00370) - 78134..78709 (-) 576 WP_011538760.1 lytic transglycosylase domain-containing protein -
  ACLM20_RS00375 (ACLM20_00375) ssb 78992..79522 (+) 531 WP_416368456.1 single-stranded DNA-binding protein Machinery gene
  ACLM20_RS00380 (ACLM20_00380) - 79632..82049 (-) 2418 WP_416368457.1 GcvT family protein -
  ACLM20_RS00385 (ACLM20_00385) - 82297..83610 (-) 1314 WP_011538763.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18205.79 Da        Isoelectric Point: 5.2795

>NTDB_id=1099795 ACLM20_RS00375 WP_416368456.1 78992..79522(+) (ssb) [Tritonibacter mobilis strain YJ3]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFNEGLVRVAEQYLRKGSKVYV
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLTMLDGRGEGGGGGGGFGGGQGGGDYGGGGGGYGGGGSYGGGGGNQGGGF
GGGGPSQNIDDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1099795 ACLM20_RS00375 WP_416368456.1 78992..79522(+) (ssb) [Tritonibacter mobilis strain YJ3]
ATGGCCGGATCCCTGAACAAAGTAATGCTGATCGGCAACCTTGGCCGCGACCCCGAGGTGCGCAGCTTCCAGAACGGTGG
CAAGGTCTGCAACCTGCGGATTGCGACCTCCGAAACCTGGAAAGACCGCAACACCGGCGAGCGCCGCGAGAAGACCGAGT
GGCACTCGGTTGCGATCTTCAACGAAGGTCTGGTGCGTGTGGCAGAGCAATATCTGCGCAAAGGGTCCAAGGTCTATGTC
GAAGGTCAGCTGCAGACCCGCAAGTGGCAAGACCAGAGCGGCCAGGATCGCTATTCTACTGAGGTTGTGCTGCAGGGCTT
TGGCTCCACACTCACCATGCTCGACGGTCGTGGCGAAGGCGGCGGTGGCGGCGGCGGCTTTGGCGGTGGTCAGGGCGGCG
GCGACTACGGTGGCGGCGGGGGCGGCTACGGTGGTGGCGGCAGCTATGGCGGCGGCGGTGGAAACCAGGGCGGTGGCTTT
GGTGGCGGTGGCCCCTCGCAAAACATCGACGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.663

100

0.517
  ssb Vibrio cholerae strain A1552

51.724

98.864

0.511
  ssb Neisseria meningitidis MC58

40.556

100

0.415
  ssb Neisseria gonorrhoeae MS11

40.556

100

0.415

Multiple sequence alignment