Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACM530_RS13175 Genome accession   NZ_CP181333
Coordinates   2854743..2855270 (+) Length   175 a.a.
NCBI ID   WP_010467282.1    Uniprot ID   A0A6L5BQP5
Organism   Pseudomonas sp. NFX183     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2849743..2860270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM530_RS13160 (ACM530_13160) bfr 2849796..2850260 (+) 465 WP_015886133.1 bacterioferritin -
  ACM530_RS13165 (ACM530_13165) uvrA 2850326..2853160 (-) 2835 WP_416364908.1 excinuclease ABC subunit UvrA -
  ACM530_RS13170 (ACM530_13170) - 2853339..2854733 (+) 1395 WP_416364909.1 MFS transporter -
  ACM530_RS13175 (ACM530_13175) ssb 2854743..2855270 (+) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  ACM530_RS13180 (ACM530_13180) - 2855380..2856288 (-) 909 WP_416364910.1 LysR family transcriptional regulator -
  ACM530_RS13185 (ACM530_13185) tam 2856390..2857151 (+) 762 WP_416364911.1 trans-aconitate 2-methyltransferase -
  ACM530_RS13190 (ACM530_13190) - 2857173..2857736 (-) 564 WP_416364912.1 cysteine hydrolase family protein -
  ACM530_RS13195 (ACM530_13195) - 2857976..2859085 (+) 1110 WP_416364913.1 DUF3182 family protein -
  ACM530_RS13200 (ACM530_13200) - 2859075..2859830 (+) 756 WP_145162677.1 alpha/beta hydrolase family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19396.56 Da        Isoelectric Point: 5.9314

>NTDB_id=1099784 ACM530_RS13175 WP_010467282.1 2854743..2855270(+) (ssb) [Pseudomonas sp. NFX183]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1099784 ACM530_RS13175 WP_010467282.1 2854743..2855270(+) (ssb) [Pseudomonas sp. NFX183]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACTGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTTTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAACAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGTCCGCAGCAGTCGGCACCGCAGCAGTCGCGTCAGGCGCCGCCTCCACAACAGGCCGCCCCA
CAGCCTGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491

Multiple sequence alignment