Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACLQ7P_RS22640 Genome accession   NZ_CP181322
Coordinates   4251994..4252512 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4246994..4257512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS22610 (ACLQ7P_22610) yyaJ 4247516..4248871 (+) 1356 WP_416247265.1 MFS transporter -
  ACLQ7P_RS22615 (ACLQ7P_22615) maa 4248905..4249459 (-) 555 WP_208556170.1 sugar O-acetyltransferase -
  ACLQ7P_RS22620 (ACLQ7P_22620) yyaH 4249475..4249855 (-) 381 WP_003244460.1 VOC family protein -
  ACLQ7P_RS22625 (ACLQ7P_22625) ccpB 4249919..4250831 (-) 913 Protein_4403 transcriptional regulator CcpB -
  ACLQ7P_RS22630 (ACLQ7P_22630) xth 4250889..4251647 (-) 759 WP_121549260.1 exodeoxyribonuclease III -
  ACLQ7P_RS22635 (ACLQ7P_22635) rpsR 4251711..4251950 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ACLQ7P_RS22640 (ACLQ7P_22640) ssbA 4251994..4252512 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACLQ7P_RS22645 (ACLQ7P_22645) rpsF 4252553..4252840 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  ACLQ7P_RS22650 (ACLQ7P_22650) ychF 4252951..4254051 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ACLQ7P_RS22655 (ACLQ7P_22655) yyaE 4254178..4256181 (-) 2004 WP_212128724.1 molybdopterin-dependent oxidoreductase -
  ACLQ7P_RS22660 (ACLQ7P_22660) yyzM 4256232..4256438 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1099741 ACLQ7P_RS22640 WP_003219228.1 4251994..4252512(-) (ssbA) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1099741 ACLQ7P_RS22640 WP_003219228.1 4251994..4252512(-) (ssbA) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment