Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACGHAD_RS03145 Genome accession   NZ_AP031500
Coordinates   740267..740803 (+) Length   178 a.a.
NCBI ID   WP_382417447.1    Uniprot ID   -
Organism   Gilvimarinus japonicus strain 12-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 735267..745803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHAD_RS03135 (R50076_06310) uvrA 735771..738626 (-) 2856 WP_382417443.1 excinuclease ABC subunit UvrA -
  ACGHAD_RS03140 (R50076_06320) - 738800..740164 (+) 1365 WP_382417445.1 MFS transporter -
  ACGHAD_RS03145 (R50076_06330) ssb 740267..740803 (+) 537 WP_382417447.1 single-stranded DNA-binding protein Machinery gene
  ACGHAD_RS03150 (R50076_06340) - 740986..742113 (-) 1128 WP_382417449.1 DUF5610 domain-containing protein -
  ACGHAD_RS03155 (R50076_06350) - 742348..743208 (+) 861 WP_382417451.1 SDR family oxidoreductase -
  ACGHAD_RS03160 (R50076_06360) fabB 743290..744507 (-) 1218 WP_339617669.1 beta-ketoacyl-ACP synthase I -
  ACGHAD_RS03165 (R50076_06380) fabA 744626..745150 (-) 525 WP_339617670.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19878.67 Da        Isoelectric Point: 4.9463

>NTDB_id=109949 ACGHAD_RS03145 WP_382417447.1 740267..740803(+) (ssb) [Gilvimarinus japonicus strain 12-2]
MASRGVNKVILVGNLGQDPETKYMPSGGAVTNISVATSDQWKDKQTGQPQERTEWHRVVFFNRIAEIAGEYLRKGSKVYI
EGSLRTRKWQGQDGQDRYTTEIVCSEMQMLDSRGAGGDNNNYGQDNYNQNQNYGGNQPQGQPQAQPQQAPRQAPPQQQPQ
QPQQPAGGFDSFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=109949 ACGHAD_RS03145 WP_382417447.1 740267..740803(+) (ssb) [Gilvimarinus japonicus strain 12-2]
ATGGCATCGCGTGGTGTTAATAAGGTCATCTTAGTAGGTAACTTGGGCCAAGACCCAGAGACAAAATACATGCCCTCTGG
CGGAGCCGTGACTAACATCAGCGTGGCCACCTCTGACCAATGGAAAGACAAGCAAACCGGTCAGCCACAAGAGCGCACCG
AGTGGCACCGCGTGGTATTTTTTAACCGCATTGCTGAGATTGCCGGCGAGTATTTACGCAAAGGCTCTAAAGTTTATATC
GAAGGTTCGCTGCGTACCCGTAAATGGCAAGGCCAAGACGGTCAGGACCGTTACACCACCGAAATCGTCTGCAGCGAGAT
GCAAATGCTCGACAGTCGCGGCGCCGGTGGCGATAATAACAATTACGGCCAAGATAACTACAATCAAAACCAGAACTACG
GCGGCAATCAGCCCCAAGGTCAACCGCAAGCGCAGCCTCAGCAGGCGCCGCGCCAAGCACCGCCGCAACAGCAACCCCAG
CAGCCGCAACAACCGGCCGGTGGGTTTGATAGCTTTGATGATGATATTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.59
  ssb Glaesserella parasuis strain SC1401

53.886

100

0.584
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.483
  ssb Neisseria meningitidis MC58

45.902

100

0.472

Multiple sequence alignment