Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACM67D_RS00485 Genome accession   NZ_CP181245
Coordinates   103909..106080 (-) Length   723 a.a.
NCBI ID   WP_050164031.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain LNP 16626     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 98909..111080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67D_RS00470 (ACM67D_00470) - 99383..100225 (-) 843 WP_003687345.1 class II glutamine amidotransferase -
  ACM67D_RS00475 (ACM67D_00475) aroB 100968..102047 (-) 1080 WP_003690567.1 3-dehydroquinate synthase -
  ACM67D_RS00480 (ACM67D_00480) - 102127..102639 (-) 513 WP_003687349.1 shikimate kinase -
  ACM67D_RS00485 (ACM67D_00485) pilQ 103909..106080 (-) 2172 WP_050164031.1 type IV pilus secretin PilQ Machinery gene
  ACM67D_RS00490 (ACM67D_00490) pilP 106099..106644 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  ACM67D_RS00495 (ACM67D_00495) - 106662..107309 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  ACM67D_RS00500 (ACM67D_00500) pilN 107310..107909 (-) 600 WP_003704911.1 PilN domain-containing protein Machinery gene
  ACM67D_RS00505 (ACM67D_00505) pilM 107912..109027 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 77977.96 Da        Isoelectric Point: 10.0021

>NTDB_id=1099477 ACM67D_RS00485 WP_050164031.1 103909..106080(-) (pilQ) [Neisseria gonorrhoeae strain LNP 16626]
MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKVSFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVL
EYADPLLSKISAAQNSSRARLVLNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQAAAPFTESVV
SVSAPFSPAKQQAAASAKQTNIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLPTALQRSLDVADFKTPV
QKVTLKRLNNDTQLIITTTGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKTFTGRKISLDFQDVEIRTILQILAK
ESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNF
QLKYKNVEEFRSILRLDNADTTGNRNTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQVMIEARIVEAA
DGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGGGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSK
TKTLANPRVLTQNRKEAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASGN
NTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFITPRIIDTAGNS
LRY

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=1099477 ACM67D_RS00485 WP_050164031.1 103909..106080(-) (pilQ) [Neisseria gonorrhoeae strain LNP 16626]
ATGAATACCAAACTGACAAAAATCATTTCCGGTCTCTTTGTCGCAACCGCCGCCTTTCAGACGGCATCGGCAGGAAACAT
TACAGACATCAAAGTTTCCTCCCTGCCCAACAAACAGAAAATCGTCAAAGTCAGCTTTGACAAAGAGATTGTCAACCCGA
CCGGCTTCGTAACCTCCTCACCGGCCCGCATCGCCTTGGACTTTGAACAAACCGGCATTTCCATGGATCAACAGGTACTC
GAATATGCCGATCCTCTGTTGAGCAAAATCAGTGCCGCACAAAACAGCAGCCGTGCGCGTCTGGTTCTGAATTTGAACAA
ACCGGGCCAATACAATACCGAAGTACGCGGGAACAAAGTTTGGATATTCATTAACGAATCGGACGATACCGTGTCCGCCC
CCGCCCGCCCAGCCGTAAAAGCCGCGCCTGCCGCACCGGCAAAACAACAGGCTGCCGCACCGTTTACCGAGTCCGTAGTA
TCCGTATCCGCACCGTTCAGCCCGGCAAAACAACAGGCAGCGGCATCGGCAAAACAAACCAATATCGATTTCCGCAAAGA
CGGCAAAAATGCCGGCATTATCGAATTGGCGGCATTGGGCTTTGCCGGGCAGCCCGACATCAGCCAACAGCACGACCACA
TCATCGTTACGCTGAAAAACCATACCCTGCCGACCGCGCTCCAACGCAGTTTGGATGTGGCAGACTTCAAAACACCGGTT
CAAAAGGTTACGCTGAAACGCCTCAATAACGACACCCAGCTGATTATCACAACAACCGGCAACTGGGAACTCGTCAACAA
ATCCGCCGCGCCCGGATACTTTACCTTCCAAGTCCTGCCGAAAAAACAAAACCTCGAGTCAGGCGGCGTGAACAATGCGC
CCAAAACCTTCACAGGCCGGAAAATCTCCCTTGACTTCCAAGATGTCGAAATCCGCACCATCCTGCAGATTTTGGCAAAA
GAATCCGGGATGAACATTGTTGCCAGCGACTCCGTCAACGGCAAAATGACCCTCTCCCTCAAAGATGTGCCTTGGGATCA
GGCTTTGGATTTGGTTATGCAGGCGCGCAACCTCGATATGCGCCAGCAAGGGAACATCGTCAACATCGCGCCCCGCGACG
AGCTGCTTGCCAAAGACAAAGCCTTCTTACAAGCGGAAAAAGACATTGCCGATCTGGGCGCGCTGTATTCCCAAAACTTC
CAATTGAAATACAAAAATGTGGAAGAATTCCGCAGCATCCTGCGTTTGGACAATGCCGACACGACCGGAAACCGCAACAC
GCTTGTCAGCGGCAGGGGCAGCGTGCTGATCGATCCCGCCACCAACACCCTGATTGTTACCGATACCCGCAGCGTCATCG
AAAAATTCCGCAAACTGATTGACGAATTGGACGTACCCGCGCAACAAGTGATGATTGAGGCGCGTATCGTCGAAGCGGCA
GACGGCTTCTCGCGCGATTTGGGCGTTAAGTTCGGCGCGACAGGCAGGAAAAAACTGAAAAATGAGACGAGCGCATTCGG
CTGGGGCGTGAACTCCGGCTTCGGGGGCGGCGATAAATGGGAGGCCCAAACCAAAATCAACCTGCCGGTTGCCGCTGCCG
CAAACAGCATTTCGCTGGTGCGCGCGATTTCCTCCGGCGCGTTGAATTTGGAATTGTCCGCATCCGAGTCGCTTTCAAAA
ACCAAAACGCTTGCCAATCCGCGCGTGCTGACCCAAAACCGCAAAGAGGCCAAAATCGAATCCGGTTACGAAATTCCTTT
TACCGTAACTACAGCCTCGGGCGGCGGCAACTCTACCAACACGGAACTCAAAAAAGCCGTCTTGGGGCTGACCGTTACGC
CGAACATCACGCCCGACGGACAAATCATCATGACCGTCAAAATCAACAAAGACTCGCCTGCACAATGTGCTTCAGGCAAC
AACACAATCCTATGTATTTCGACCAAAAGCCTGAATACGCAGGCTATGGTTGAAAACGGCGGCACTTTGATTGTCGGCGG
TATTTATGAAGAAAACAACGGCAATACGCTGACCAAAGTCCCCCTGTTGGGCGACATCCCCGTTATCGGCAACCTCTTTA
AAACACGCGGGAAAAAAACCGACCGCCGCGAACTGCTGATTTTCATTACCCCGAGGATTATAGATACGGCCGGCAACAGC
CTGCGCTATTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(43-116)

Bacterial type II/III secretion system short domain (Secretin_N)

(398-469)

Secretin and TonB N terminus short domain (STN)

(325-370)

Bacterial type II and III secretion system protein (Secretin)

(555-715)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

99.862

100

0.999
  pilQ Neisseria meningitidis MC58

90.117

100

0.959
  pilQ Neisseria meningitidis M1080

90.933

100

0.957

Multiple sequence alignment