Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACM660_RS18570 Genome accession   NZ_CP181170
Coordinates   3915532..3916128 (-) Length   198 a.a.
NCBI ID   WP_005201542.1    Uniprot ID   -
Organism   Acinetobacter sp. SEK541     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3910532..3921128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS18550 (ACM660_18550) - 3910861..3912159 (-) 1299 WP_004803715.1 FAD-dependent oxidoreductase -
  ACM660_RS18555 (ACM660_18555) - 3912591..3913457 (-) 867 WP_005201539.1 pirin family protein -
  ACM660_RS18560 (ACM660_18560) ycaC 3913743..3914369 (+) 627 WP_004657244.1 isochorismate family cysteine hydrolase YcaC -
  ACM660_RS18565 (ACM660_18565) - 3914439..3915365 (+) 927 WP_004803710.1 LysR substrate-binding domain-containing protein -
  ACM660_RS18570 (ACM660_18570) ssb 3915532..3916128 (-) 597 WP_005201542.1 single-stranded DNA-binding protein Machinery gene
  ACM660_RS18575 (ACM660_18575) - 3916180..3917541 (-) 1362 WP_005201543.1 MFS transporter -
  ACM660_RS18580 (ACM660_18580) - 3917700..3918746 (-) 1047 WP_412781877.1 DUF475 domain-containing protein -
  ACM660_RS18585 (ACM660_18585) tenA 3918952..3919626 (+) 675 WP_005201544.1 thiaminase II -
  ACM660_RS18590 (ACM660_18590) - 3919779..3920132 (-) 354 WP_004803688.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21668.41 Da        Isoelectric Point: 6.4819

>NTDB_id=1099403 ACM660_RS18570 WP_005201542.1 3915532..3916128(-) (ssb) [Acinetobacter sp. SEK541]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWMDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGEQSGGDFNQPRFNNNNNQGGSYQNTGYNNNNNQGGYGQGGGFNGGS
QQGNYAGSPQAGNGFNTPKAAPQPAAAAPADLDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1099403 ACM660_RS18570 WP_005201542.1 3915532..3916128(-) (ssb) [Acinetobacter sp. SEK541]
ATGCGTGGTGTGAATAAAGTTATTTTAGTAGGTACTTTAGGTAAAGATCCGGAAACAAAAACTTTTCCAAATGGTGGATC
ATTAACTCAATTCTCGATTGCGACAAGTGAATCGTGGATGGACAAAAGTACAGGTGAGCGTAAAGAGCAAACAGAATGGC
ACCGTATCGTGTTACATAACCGTTTAGGTGAAATTGCACAACAGTATCTCCGTAAAGGCTCAAAAGTGTATATCGAAGGT
TCATTGCGTACCCGTCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACTGAAATTCGTGGCGATCAAATGCAGAT
GCTGGATAGCCGTCAACAAGGCGAGCAGAGCGGTGGTGATTTTAACCAACCCCGTTTTAACAACAATAATAACCAAGGTG
GCAGTTACCAAAATACGGGCTATAACAATAACAACAACCAAGGTGGTTATGGTCAAGGCGGCGGCTTTAATGGCGGCAGC
CAGCAAGGTAATTATGCAGGTAGCCCACAAGCAGGCAATGGTTTTAATACACCAAAAGCAGCACCTCAACCTGCTGCGGC
AGCACCTGCTGATTTAGACGATGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.709

100

0.54
  ssb Vibrio cholerae strain A1552

44.231

100

0.465
  ssb Neisseria meningitidis MC58

38.308

100

0.389
  ssb Neisseria gonorrhoeae MS11

38.462

98.485

0.379

Multiple sequence alignment