Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACMYR2_RS09035 | Genome accession | NZ_CP181167 |
| Coordinates | 1915714..1916196 (-) | Length | 160 a.a. |
| NCBI ID | WP_347264764.1 | Uniprot ID | - |
| Organism | Nitrobacter sp. TKz-YC01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1887451..1926222 | 1915714..1916196 | within | 0 |
Gene organization within MGE regions
Location: 1887451..1926222
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMYR2_RS08865 (ACMYR2_08865) | - | 1887451..1889043 (-) | 1593 | WP_416194003.1 | phage tail protein | - |
| ACMYR2_RS08870 (ACMYR2_08870) | - | 1889043..1889462 (-) | 420 | WP_416194004.1 | DUF6950 family protein | - |
| ACMYR2_RS08875 (ACMYR2_08875) | - | 1889459..1890073 (-) | 615 | WP_416194005.1 | hypothetical protein | - |
| ACMYR2_RS08880 (ACMYR2_08880) | - | 1890080..1890793 (-) | 714 | WP_416194006.1 | hypothetical protein | - |
| ACMYR2_RS08885 (ACMYR2_08885) | - | 1890796..1892853 (-) | 2058 | WP_416194007.1 | tape measure protein | - |
| ACMYR2_RS08890 (ACMYR2_08890) | - | 1892853..1893002 (-) | 150 | WP_416194008.1 | phage tail assembly chaperone | - |
| ACMYR2_RS08895 (ACMYR2_08895) | - | 1893020..1893397 (-) | 378 | WP_416194009.1 | hypothetical protein | - |
| ACMYR2_RS08900 (ACMYR2_08900) | - | 1893402..1894097 (-) | 696 | WP_416194010.1 | phage major tail protein, TP901-1 family | - |
| ACMYR2_RS08905 (ACMYR2_08905) | - | 1894167..1894586 (-) | 420 | WP_416194011.1 | DUF3168 domain-containing protein | - |
| ACMYR2_RS08910 (ACMYR2_08910) | - | 1894586..1895002 (-) | 417 | WP_416194012.1 | HK97 gp10 family phage protein | - |
| ACMYR2_RS08915 (ACMYR2_08915) | - | 1895002..1895268 (-) | 267 | WP_416194013.1 | hypothetical protein | - |
| ACMYR2_RS08920 (ACMYR2_08920) | - | 1895268..1895612 (-) | 345 | WP_416194014.1 | head-tail adaptor protein | - |
| ACMYR2_RS08925 (ACMYR2_08925) | - | 1895614..1895811 (-) | 198 | WP_416194015.1 | hypothetical protein | - |
| ACMYR2_RS08930 (ACMYR2_08930) | - | 1895812..1896408 (-) | 597 | WP_416194016.1 | head-tail connector protein | - |
| ACMYR2_RS08935 (ACMYR2_08935) | - | 1896455..1896841 (-) | 387 | WP_416194017.1 | hypothetical protein | - |
| ACMYR2_RS08940 (ACMYR2_08940) | - | 1896909..1898186 (-) | 1278 | WP_416194018.1 | phage major capsid protein | - |
| ACMYR2_RS08945 (ACMYR2_08945) | - | 1898198..1899049 (-) | 852 | WP_416194019.1 | head maturation protease, ClpP-related | - |
| ACMYR2_RS08950 (ACMYR2_08950) | - | 1899027..1900307 (-) | 1281 | WP_416194020.1 | phage portal protein | - |
| ACMYR2_RS08955 (ACMYR2_08955) | - | 1900320..1902188 (-) | 1869 | WP_416194021.1 | terminase large subunit | - |
| ACMYR2_RS08960 (ACMYR2_08960) | - | 1902121..1903527 (-) | 1407 | WP_416194022.1 | site-specific DNA-methyltransferase | - |
| ACMYR2_RS08965 (ACMYR2_08965) | - | 1903508..1903939 (-) | 432 | WP_416194023.1 | P27 family phage terminase small subunit | - |
| ACMYR2_RS08970 (ACMYR2_08970) | - | 1904190..1904435 (-) | 246 | WP_244613653.1 | hypothetical protein | - |
| ACMYR2_RS08975 (ACMYR2_08975) | nusG | 1904709..1905413 (-) | 705 | WP_416194024.1 | transcription termination/antitermination protein NusG | - |
| ACMYR2_RS08980 (ACMYR2_08980) | - | 1905410..1906546 (-) | 1137 | WP_416194025.1 | hypothetical protein | - |
| ACMYR2_RS08985 (ACMYR2_08985) | - | 1906768..1907493 (-) | 726 | WP_416194026.1 | hypothetical protein | - |
| ACMYR2_RS08990 (ACMYR2_08990) | - | 1907490..1907699 (-) | 210 | WP_416194027.1 | hypothetical protein | - |
| ACMYR2_RS08995 (ACMYR2_08995) | - | 1907696..1908079 (-) | 384 | WP_416194028.1 | hypothetical protein | - |
| ACMYR2_RS09000 (ACMYR2_09000) | - | 1908097..1910046 (-) | 1950 | WP_416194029.1 | MT-A70 family methyltransferase | - |
| ACMYR2_RS09005 (ACMYR2_09005) | - | 1910046..1910516 (-) | 471 | WP_416194079.1 | GapR family DNA-binding domain-containing protein | - |
| ACMYR2_RS09010 (ACMYR2_09010) | - | 1910503..1911429 (+) | 927 | WP_416194030.1 | phage Gp37/Gp68 family protein | - |
| ACMYR2_RS09015 (ACMYR2_09015) | - | 1911662..1912852 (+) | 1191 | WP_416194031.1 | tyrosine-type recombinase/integrase | - |
| ACMYR2_RS09020 (ACMYR2_09020) | - | 1913118..1913822 (+) | 705 | WP_416194032.1 | carbonic anhydrase | - |
| ACMYR2_RS09030 (ACMYR2_09030) | - | 1914690..1915643 (+) | 954 | WP_416194033.1 | homocysteine S-methyltransferase family protein | - |
| ACMYR2_RS09035 (ACMYR2_09035) | ssb | 1915714..1916196 (-) | 483 | WP_347264764.1 | single-stranded DNA-binding protein | Machinery gene |
| ACMYR2_RS09040 (ACMYR2_09040) | - | 1916615..1917385 (+) | 771 | WP_347264765.1 | outer membrane protein | - |
| ACMYR2_RS09045 (ACMYR2_09045) | uvrA | 1917785..1920760 (+) | 2976 | WP_347264766.1 | excinuclease ABC subunit UvrA | - |
| ACMYR2_RS09050 (ACMYR2_09050) | - | 1920796..1921083 (-) | 288 | WP_347264767.1 | hypothetical protein | - |
| ACMYR2_RS09055 (ACMYR2_09055) | - | 1921082..1921585 (+) | 504 | WP_347264768.1 | BA14K family protein | - |
| ACMYR2_RS09060 (ACMYR2_09060) | - | 1922398..1926222 (+) | 3825 | WP_416194034.1 | vitamin B12-dependent ribonucleotide reductase | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17311.23 Da Isoelectric Point: 6.9865
>NTDB_id=1099361 ACMYR2_RS09035 WP_347264764.1 1915714..1916196(-) (ssb) [Nitrobacter sp. TKz-YC01]
MAGSVNKVILIGNLGADPEIKRTQDGRPIANLRIATSETWRDRTSGERKEKTEWHRVVIFSEGLCKIAEQYLKKGSKVYI
EGQLQTRKWTDQSGVEKYSTEVVLQNFNSTLTMLDGRNSGGGNFGPDDAGSGFGSGNPSGSAPRRAATAAGGDMDDDIPF
MAGSVNKVILIGNLGADPEIKRTQDGRPIANLRIATSETWRDRTSGERKEKTEWHRVVIFSEGLCKIAEQYLKKGSKVYI
EGQLQTRKWTDQSGVEKYSTEVVLQNFNSTLTMLDGRNSGGGNFGPDDAGSGFGSGNPSGSAPRRAATAAGGDMDDDIPF
Nucleotide
Download Length: 483 bp
>NTDB_id=1099361 ACMYR2_RS09035 WP_347264764.1 1915714..1916196(-) (ssb) [Nitrobacter sp. TKz-YC01]
ATGGCGGGTAGCGTGAACAAGGTTATTCTGATCGGCAATCTCGGCGCCGACCCGGAGATCAAACGAACCCAGGACGGACG
GCCGATCGCCAACCTGCGGATTGCCACCTCTGAAACCTGGCGCGACAGAACCAGCGGCGAGCGCAAGGAGAAGACCGAGT
GGCATCGCGTCGTGATCTTCAGCGAAGGCCTCTGTAAGATCGCTGAGCAGTATTTGAAGAAAGGCTCGAAGGTCTACATC
GAAGGTCAGTTGCAGACCCGCAAATGGACGGACCAGAGCGGCGTGGAAAAATACTCCACCGAAGTGGTGCTTCAGAACTT
CAATTCAACTCTGACGATGCTCGATGGCCGCAATAGCGGCGGCGGCAATTTCGGACCTGACGATGCCGGCAGCGGCTTCG
GGTCCGGAAATCCGTCCGGCAGCGCGCCACGCCGTGCCGCGACCGCCGCCGGCGGCGACATGGACGACGACATTCCATTT
TAG
ATGGCGGGTAGCGTGAACAAGGTTATTCTGATCGGCAATCTCGGCGCCGACCCGGAGATCAAACGAACCCAGGACGGACG
GCCGATCGCCAACCTGCGGATTGCCACCTCTGAAACCTGGCGCGACAGAACCAGCGGCGAGCGCAAGGAGAAGACCGAGT
GGCATCGCGTCGTGATCTTCAGCGAAGGCCTCTGTAAGATCGCTGAGCAGTATTTGAAGAAAGGCTCGAAGGTCTACATC
GAAGGTCAGTTGCAGACCCGCAAATGGACGGACCAGAGCGGCGTGGAAAAATACTCCACCGAAGTGGTGCTTCAGAACTT
CAATTCAACTCTGACGATGCTCGATGGCCGCAATAGCGGCGGCGGCAATTTCGGACCTGACGATGCCGGCAGCGGCTTCG
GGTCCGGAAATCCGTCCGGCAGCGCGCCACGCCGTGCCGCGACCGCCGCCGGCGGCGACATGGACGACGACATTCCATTT
TAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
50.867 |
100 |
0.55 |
| ssb | Glaesserella parasuis strain SC1401 |
43.085 |
100 |
0.506 |
| ssb | Neisseria gonorrhoeae MS11 |
40.556 |
100 |
0.456 |
| ssb | Neisseria meningitidis MC58 |
40.782 |
100 |
0.456 |